Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0679
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 184 1e-47
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 184 1e-47
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 184 1e-47
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 102 5e-23
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 92 8e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 50 4e-07
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 39 8e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 39 8e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.012
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.81
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 28 1.4
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 27 3.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 10.0
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 10.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 184 bits (448), Expect = 1e-47
Identities = 87/116 (75%), Positives = 92/116 (79%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGI 223
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAW +
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 224 GXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
K ALWKFET Y VT+IDAP HRDFI NM TGTSQ DCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLII 116
Score = 36.3 bits (80), Expect = 0.004
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 447 REHALLAFNPRCQTAHRRGXQMXSTXPPYSEXRFLGNPEGSIPYIKKIGYNP-VCRFRXH 623
REHALLA+ + +M +T +S+ RF + + +IKK+G+NP F
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 624 FGXHXDNMLXPST 662
G DNM+ P+T
Sbjct: 192 SGFQGDNMIEPTT 204
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/37 (56%), Positives = 22/37 (59%)
Frame = +1
Query: 400 GTGEXEAGISXNGPNPVSMPCSLLTLGVKQLIVGVXK 510
GTGE EAGIS +G TLGVKQLIV V K
Sbjct: 119 GTGEFEAGISKDGQTR-EHALLAYTLGVKQLIVAVNK 154
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 184 bits (447), Expect = 1e-47
Identities = 86/116 (74%), Positives = 92/116 (79%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGI 223
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAW +
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 224 GXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
K ALWKFET Y VT+IDAP HRDFI NM TGTSQ DCA+LI+
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116
Score = 36.3 bits (80), Expect = 0.004
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 447 REHALLAFNPRCQTAHRRGXQMXSTXPPYSEXRFLGNPEGSIPYIKKIGYNP-VCRFRXH 623
REHALLA+ + +M +T +S+ RF + + +IKK+G+NP F
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 624 FGXHXDNMLXPST 662
G DNM+ P+T
Sbjct: 192 SGFQGDNMIEPTT 204
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/37 (56%), Positives = 22/37 (59%)
Frame = +1
Query: 400 GTGEXEAGISXNGPNPVSMPCSLLTLGVKQLIVGVXK 510
GTGE EAGIS +G TLGVKQLIV V K
Sbjct: 119 GTGEFEAGISKDGQTR-EHALLAYTLGVKQLIVAVNK 154
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 184 bits (447), Expect = 1e-47
Identities = 86/116 (74%), Positives = 92/116 (79%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGI 223
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAW +
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 224 GXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
K ALWKFET Y VT+IDAP HRDFI NM TGTSQ DCA+LI+
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILII 116
Score = 36.3 bits (80), Expect = 0.004
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 447 REHALLAFNPRCQTAHRRGXQMXSTXPPYSEXRFLGNPEGSIPYIKKIGYNP-VCRFRXH 623
REHALLA+ + +M +T +S+ RF + + +IKK+G+NP F
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 624 FGXHXDNMLXPST 662
G DNM+ P+T
Sbjct: 192 SGFQGDNMIEPTT 204
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/37 (56%), Positives = 22/37 (59%)
Frame = +1
Query: 400 GTGEXEAGISXNGPNPVSMPCSLLTLGVKQLIVGVXK 510
GTGE EAGIS +G TLGVKQLIV V K
Sbjct: 119 GTGEFEAGISKDGQTR-EHALLAYTLGVKQLIVAVNK 154
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 102 bits (244), Expect = 5e-23
Identities = 48/115 (41%), Positives = 69/115 (60%)
Frame = +2
Query: 56 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXTK 235
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W + T
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 236 GXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSCR 400
FET +++DAP H+ ++ NM G SQ D VL++S R
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISAR 350
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 91.9 bits (218), Expect = 8e-20
Identities = 48/112 (42%), Positives = 63/112 (56%)
Frame = +2
Query: 56 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXTK 235
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW + T+
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 236 GXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
A FE+ I DAP HRDFI M G S D AVL+V
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 49.6 bits (113), Expect = 4e-07
Identities = 36/115 (31%), Positives = 53/115 (46%)
Frame = +2
Query: 50 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGX 229
++K H+NI IGHVD GK+T T I KC ++G+ SF I
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 230 TKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVS 394
A ++ET+ + +D P H D+I NM TG + D A+++VS
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVS 148
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 38.7 bits (86), Expect = 8e-04
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 214
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 215 WGIGXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
I T + + + + V +ID+P H DF + D A+++V
Sbjct: 73 TAISLFAEM--TDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 38.7 bits (86), Expect = 8e-04
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 214
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 215 WGIGXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
I T + + + + V +ID+P H DF + D A+++V
Sbjct: 73 TAISLFAEM--TDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.7 bits (76), Expect = 0.012
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIEKFEKEAQEMGKGSFKYAWGIG-XTKGX 241
NI + H+DSGK+T T ++Y G I D + + +M + GI +
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAAT 120
Query: 242 X*TWXHXRXAL-------WKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSCR 400
TW + FE S Y + IID P H DF + D AVL++
Sbjct: 121 HCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAV 179
Query: 401 VPVXSKLVSL 430
V S+ +++
Sbjct: 180 SGVQSQTITV 189
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.81
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCG 139
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 219 PQAYLKDPLPIS-WASFSNFSMVRLSIPPHL 130
P+ Y+K P+P S ++S N S++ +PP +
Sbjct: 569 PRTYVKTPIPFSKFSSSENLSLIPSLLPPSI 599
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 504 YPYDELFDTEG*KRARHAHGVWTVXRDTSFXFTGTRQLTMSTAQ 373
YP +L EG + H W + RD F F GT L+ S +
Sbjct: 144 YPLKKLNLVEGLRSFTHCTNSWDIFRD-YFEFIGTSTLSPSVEE 186
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 38 PKMGKEKTHINIVVIGHVDSGKST 109
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 185 PGPPSRTSRWYVCQYHHIC 129
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,796
Number of Sequences: 5004
Number of extensions: 43791
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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