Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0679
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 79 2e-15
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 69 5e-12
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 49 3e-06
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.37
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 29 3.4
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 29 4.5
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 190
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/60 (63%), Positives = 40/60 (66%)
Frame = +2
Query: 188 MGKGSFKYAWGIGXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQ 367
MGKGSFKYAW + K ALWKFET YYVT+IDAP HRDFI NM TGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 68.5 bits (160), Expect = 5e-12
Identities = 30/91 (32%), Positives = 51/91 (56%)
Frame = +2
Query: 128 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXTKGXX*TWXHXRXALWKFETSXYYVT 307
Y G +DKRT+EK+E+EA+E + ++ +W + + F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 308 IIDAP*HRDFIXNMXTGTSQGDCAVLIVSCR 400
++DAP H+ F+ NM +G +Q D VL++S R
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISAR 256
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +2
Query: 272 LWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
L +F+T +T++DAP H+DFI NM TG +Q D A+L+V
Sbjct: 5 LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVV 44
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 139
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 59 THINIVVIGHVDSGKSTTTGHLIY 130
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 29.1 bits (62), Expect = 3.4
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Frame = +2
Query: 41 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWG 220
K+ + + NI V+GHVDSGK++ L + F+K Q +G
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERG---ITLD 78
Query: 221 IGXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTS-QGDCAVL 385
+G + H R A E +T++D P H I + G G+C +
Sbjct: 79 LGFSSFQVALPEHLRSA--GSEHDLLQMTLVDCPGHASLIKTIIGGAQIIGECGTI 132
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 166
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/121 (22%), Positives = 47/121 (38%)
Frame = +2
Query: 77 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXTKGXX*TWX 256
+I H D+GK+T T L+ G I + K K + KG+ I +G
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNK----IKKGATSDFMEIERQRG-----I 65
Query: 257 HXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSCRVPVXSKLVSLXT 436
++ F + I+D P H+DF + + D ++++ V + L
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLVE 125
Query: 437 V 439
V
Sbjct: 126 V 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,796,696
Number of Sequences: 59808
Number of extensions: 347306
Number of successful extensions: 665
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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