Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0679
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 175 2e-44
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 175 2e-44
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 175 2e-44
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 175 2e-44
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 101 3e-22
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 92 3e-19
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 57 9e-09
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 47 1e-05
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 39 0.003
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 36 0.033
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 34 0.075
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 34 0.075
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.23
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.23
At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / sta... 30 1.6
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 29 3.8
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 28 6.6
At1g05520.1 68414.m00565 transport protein, putative similar to ... 28 6.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 175 bits (426), Expect = 2e-44
Identities = 84/116 (72%), Positives = 89/116 (76%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGI 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAW +
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 224 GXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
K ALWKFET+ YY T+IDAP HRDFI NM TGTSQ DCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 447 REHALLAFNPRCQTAHRRGXQMXSTXPPYSEXRFLGNPEGSIPYIKKIGYNP-VCRFRXH 623
REHALLAF + +M +T P YS+ R+ + Y+KK+GYNP F
Sbjct: 134 REHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPI 193
Query: 624 FGXHXDNMLXPST 662
G DNM+ ST
Sbjct: 194 SGFEGDNMIERST 206
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 175 bits (426), Expect = 2e-44
Identities = 84/116 (72%), Positives = 89/116 (76%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGI 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAW +
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 224 GXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
K ALWKFET+ YY T+IDAP HRDFI NM TGTSQ DCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 447 REHALLAFNPRCQTAHRRGXQMXSTXPPYSEXRFLGNPEGSIPYIKKIGYNP-VCRFRXH 623
REHALLAF + +M +T P YS+ R+ + Y+KK+GYNP F
Sbjct: 134 REHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPI 193
Query: 624 FGXHXDNMLXPST 662
G DNM+ ST
Sbjct: 194 SGFEGDNMIERST 206
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 175 bits (426), Expect = 2e-44
Identities = 84/116 (72%), Positives = 89/116 (76%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGI 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAW +
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 224 GXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
K ALWKFET+ YY T+IDAP HRDFI NM TGTSQ DCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 447 REHALLAFNPRCQTAHRRGXQMXSTXPPYSEXRFLGNPEGSIPYIKKIGYNP-VCRFRXH 623
REHALLAF + +M +T P YS+ R+ + Y+KK+GYNP F
Sbjct: 134 REHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPI 193
Query: 624 FGXHXDNMLXPST 662
G DNM+ ST
Sbjct: 194 SGFEGDNMIERST 206
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 175 bits (426), Expect = 2e-44
Identities = 84/116 (72%), Positives = 89/116 (76%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGI 223
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAW +
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 224 GXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
K ALWKFET+ YY T+IDAP HRDFI NM TGTSQ DCAVLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLII 116
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 447 REHALLAFNPRCQTAHRRGXQMXSTXPPYSEXRFLGNPEGSIPYIKKIGYNP-VCRFRXH 623
REHALLAF + +M +T P YS+ R+ + Y+KK+GYNP F
Sbjct: 134 REHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPI 193
Query: 624 FGXHXDNMLXPST 662
G DNM+ ST
Sbjct: 194 SGFEGDNMIERST 206
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 101 bits (243), Expect = 3e-22
Identities = 43/115 (37%), Positives = 71/115 (61%)
Frame = +2
Query: 59 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXTKG 238
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW + +
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 239 XX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSCRV 403
A+ F + ++V ++D+P H+DF+ NM G +Q D A+L++ V
Sbjct: 298 ERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASV 352
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 92.3 bits (219), Expect = 3e-19
Identities = 44/116 (37%), Positives = 68/116 (58%)
Frame = +2
Query: 53 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXT 232
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+ +
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 233 KGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSCR 400
+ FET TI+DAP H+ ++ NM +G SQ D VL++S R
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR 213
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 57.2 bits (132), Expect = 9e-09
Identities = 38/118 (32%), Positives = 56/118 (47%)
Frame = +2
Query: 41 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWG 220
K ++K H+NI IGHVD GK+T T L I +K++ E+ + A G
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYD----EIDAAPEERARG 127
Query: 221 IGXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVS 394
I A ++ET + +D P H D++ NM TG +Q D A+L+VS
Sbjct: 128 ITINT-----------ATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVS 174
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/115 (28%), Positives = 51/115 (44%)
Frame = +2
Query: 50 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGX 229
+ K H+N+ IGHVD GK+T T + K F+ E+ K + GI
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFD----EIDKAPEEKKRGITI 118
Query: 230 TKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVS 394
++ET+ + +D P H D++ NM TG +Q D +L+VS
Sbjct: 119 ATAHV-----------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVS 162
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKGSFKYAWGIGXTKG 238
N+ VI HVD GKST T L+ G I + + + A E +G + GI
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 239 XX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSC 397
T + + + Y + +ID+P H DF + D A+++V C
Sbjct: 81 M--TDESLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDC 131
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 35.5 bits (78), Expect = 0.033
Identities = 38/132 (28%), Positives = 55/132 (41%)
Frame = +2
Query: 32 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 211
D K EK N +I H+D GKST L+ G TI+K + Q + K +
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTG-----TIKKGHGQPQYLDK--LQR 108
Query: 212 AWGIGXTKGXX*TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIV 391
GI K T + + E S Y + +ID P H DF + S A+L+V
Sbjct: 109 ERGI-TVKAQTATMFY-ENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVV 166
Query: 392 SCRVPVXSKLVS 427
V ++ V+
Sbjct: 167 DAAQGVQAQTVA 178
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 34.3 bits (75), Expect = 0.075
Identities = 33/112 (29%), Positives = 48/112 (42%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXTKGXX* 247
NI + H+DSGK+T T +++ G R E E ++ G G+ + + KG
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGAKMDSMDLEREKGIT- 120
Query: 248 TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSCRV 403
WK Y V IID P H DF + D A+L++ C V
Sbjct: 121 IQSAATYCTWK----DYKVNIIDTPGHVDFTIEVERALRVLDGAILVL-CSV 167
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 34.3 bits (75), Expect = 0.075
Identities = 33/112 (29%), Positives = 48/112 (42%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXTKGXX* 247
NI + H+DSGK+T T +++ G R E E ++ G G+ + + KG
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTG----RIHEIHEVRGRD-GVGAKMDSMDLEREKGIT- 120
Query: 248 TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSCRV 403
WK Y V IID P H DF + D A+L++ C V
Sbjct: 121 IQSAATYCTWK----DYKVNIIDTPGHVDFTIEVERALRVLDGAILVL-CSV 167
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGG 142
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 56 KTHINIVVIGHVDSGKSTTTGHLIYKCG 139
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At5g03650.1 68418.m00324 1,4-alpha-glucan branching enzyme / starch
branching enzyme class II (SBE2-2) identical to starch
branching enzyme class II [Arabidopsis thaliana]
GI:726490
Length = 716
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Frame = +3
Query: 570 IPYIKKIGYNPV--CRFRXH-----FGXHXDNMLXPSTKC 668
+P IKK+GYN V + H FG H N PS++C
Sbjct: 229 LPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRC 268
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/120 (20%), Positives = 49/120 (40%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWGIGXTKGXX* 247
N +I H+D GKST L+ G T++ + + Q + + GI
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTG-----TVQNRDMKEQFLDNMDLERERGITIK----- 137
Query: 248 TWXHXRXALWKFETSXYYVTIIDAP*HRDFIXNMXTGTSQGDCAVLIVSCRVPVXSKLVS 427
+ +E + + + +ID P H DF + + + A+L+V V ++ ++
Sbjct: 138 --LQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 195
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 444 PREHALLAFNPRCQTAHRRGXQMXSTXPPYSEXRFLGNPEGSIPYIKKIGYNPVCR 611
PR H A + + RG S PPY LG+ EG Y++ Y + R
Sbjct: 215 PRVHICFAKSEPSSSGSGRGPSGRSLSPPYRSVDRLGSSEG---YLQDRNYGSISR 267
>At1g05520.1 68414.m00565 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 783
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 555 NPEGSIPYIKKIGYNPVCRFRXHFGXHXDNMLXPSTKC 668
NP + ++ KI P+C R HF H M + C
Sbjct: 67 NPFARVDFLAKIWICPICFQRNHFPPHYHVMSETNVPC 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,196
Number of Sequences: 28952
Number of extensions: 244579
Number of successful extensions: 568
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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