Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0678
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)                     28   5.7  
SB_43440| Best HMM Match : PADR1 (HMM E-Value=0.45)                    28   7.6  

>SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)
          Length = 311

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 150 AVERSKLIYTDNKGELITNVXNNLIRNNKMNCMEYPTSSGCKAPRTSSGDCFPVEFTLIL 329
           A++   LI+ D   +L  N   +     +  C E  TSS       SSG C P E   ++
Sbjct: 3   ALDEHYLIFEDTN-KLKYNRFRSTEFPPEKECNEQNTSSSATNSHESSGSCSPTENNNLI 61

Query: 330 AENYVK 347
             N+ K
Sbjct: 62  LNNFPK 67


>SB_43440| Best HMM Match : PADR1 (HMM E-Value=0.45)
          Length = 942

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 388 TMGGVAYGDSKDRTSSRVSWKFIPLWENNKVYFKIENTERN 510
           +MGG     SK+RTS+ +  K+  +W+  +V  K+ N++ N
Sbjct: 395 SMGGAIGSGSKERTSTPL--KYRDVWQAAQVESKVWNSKEN 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,475,917
Number of Sequences: 59808
Number of extensions: 358118
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)