Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0678
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    27   8.7  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    27   8.7  

>L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.8 protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 26/90 (28%), Positives = 42/90 (46%)
 Frame = +3

Query: 258 TSSGCKAPRTSSGDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGRGCLRGQQRQDQFK 437
           +SS   +PR    DC      ++++EN  KL+  + G     S      + G + Q   +
Sbjct: 281 SSSSRISPRHECFDCHVSRTKILISENKCKLLEHKIGTMQQESLEANAQMNGLE-QTVLR 339

Query: 438 SQLEIHSAVGEQQGLLQDREH*AQQNLALK 527
            ++E H A+ E   L Q R+    QNLA+K
Sbjct: 340 LRMEAH-ALREHNELFQ-RKLLECQNLAVK 367


>U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical
           protein F56A3.1 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +3

Query: 174 YTDNKGELITNVXNNLIRNNKMNCMEYPTSSGCKAPRTSSGDCFPVEFTLILAENYVKLM 353
           + D  G  I    N  IRN ++N ++  +SS C     SS    P     +   N++K  
Sbjct: 112 FDDIHGNGIFYPINEPIRNFELNLLKCLSSSNCCVALPSSSPSTPGRICAMTVFNFLKWF 171

Query: 354 YRRDGLAFTLSDNGRGCLR 410
            R   L  + SD+    LR
Sbjct: 172 PRCRVLLVSSSDSWISSLR 190


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 287 CPRSLASRAGRVLHAVHLVVSYQIVXDICDELTLVI 180
           C +++   AG +LH V L + Y+I  +    +  VI
Sbjct: 631 CSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 666


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 287 CPRSLASRAGRVLHAVHLVVSYQIVXDICDELTLVI 180
           C +++   AG +LH V L + Y+I  +    +  VI
Sbjct: 631 CSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVI 666


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,361
Number of Sequences: 27780
Number of extensions: 257790
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)