Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0678
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferas...    33   0.22 
At1g19485.1 68414.m02427 AT hook motif-containing protein contai...    29   2.0  
At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein si...    29   2.7  
At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containi...    28   6.2  
At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1) ide...    27   8.2  
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    27   8.2  
At1g65060.2 68414.m07376 4-coumarate--CoA ligase 3 / 4-coumaroyl...    27   8.2  
At1g65060.1 68414.m07375 4-coumarate--CoA ligase 3 / 4-coumaroyl...    27   8.2  

>At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferase /
           xyloglucan alpha-(1,2)-fucosyltransferase (FUT1) (FT1)
           identical to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 558

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 129 IIADYDSAVERSKLIYTD-NKGELITNVXNNLIRNNKMNCMEYPTSSG 269
           ++ + D+ VERS+ + T  +K  L+T++      N K    EYPTS+G
Sbjct: 391 LLPEVDTLVERSRHVNTPKHKAVLVTSLNAGYAENLKSMYWEYPTSTG 438


>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
           Pfam profile: PF00730 HhH-GPD superfamily base excision
           DNA repair protein; contains Pfam PF02178: AT hook
           motif; contains Pfam PF00400: WD domain, G-beta repeat
           (5 copies); contains Prosite PS00354: HMG-I and HMG-Y
           DNA-binding domain (A+T-hook)
          Length = 815

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 585 PIEV*RPRKPCGRXXX*FGLSMPSSVALSVLYLEVDLVVLPQRNEFPA 442
           P+E   P+KP GR        +P  +   VLY+E   V  P+ +  PA
Sbjct: 219 PVETTEPKKPRGRPRKKSTAELPVELDDDVLYVEALSVRYPENSVVPA 266


>At1g07000.1 68414.m00745 exocyst subunit EXO70 family protein
           similar to leucine zipper protein GI:10177020 from
           [Arabidopsis thaliana] contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 599

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 125 VIVKMLRQDFVEGCAFVGVQRRREETQDNNSGLHLR 18
           + V+M+   F + C+ V   RRRE  +++ S LHLR
Sbjct: 192 IAVRMVAGGFAKECSRVYSSRRREFLEESLSRLHLR 227


>At3g18020.1 68416.m02290 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 688

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
 Frame = +3

Query: 48  CLFAASLYADEGTAFNEILAEHLYN---DVIIADYDSAVERSKL-IYTDNKGELITNVXN 215
           C+ A  L  +EG+ F    +E+ Y    + +  + D+   R+ L +    +G   T + N
Sbjct: 358 CMRAYQLL-EEGSEFEFFPSEYTYKLLMESLCKELDTGKARNVLELMLRKEGADRTRIYN 416

Query: 216 NLIRNNKMNCMEYPTSSGCKAPRTSSGDCFPVEFTLILAENYVKLMYRRDGLAFTLSD-- 389
             +R   +  M+ PT           GDC P E+TL    N +  M R D     L D  
Sbjct: 417 IYLRG--LCVMDNPTEILNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMKVLDDMM 474

Query: 390 NGRGC 404
            G+ C
Sbjct: 475 TGKFC 479


>At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1)
           identical to SP|Q9SB81 Peroxidase 42 precursor (EC
           1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b)
           {Arabidopsis thaliana}
          Length = 330

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 36  VVVLCLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGELITNVXN 215
           V +LCL+A S  ++  T     L  + Y D      D   E+ KL+Y  +K    + + N
Sbjct: 9   VAILCLWALSATSEAVTEAEPGLMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRN 68


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 21  KMKSAVVVLCLFAASLYAD-EGTAFNEILAEHLYNDVIIADYDSAVERSKLIYTDNKGEL 197
           K K+   +LC+   +++   +      +  +++ ++++  DYD+ V+ S LI  +    +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 198 ITN 206
           +TN
Sbjct: 458 LTN 460


>At1g65060.2 68414.m07376 4-coumarate--CoA ligase 3 /
           4-coumaroyl-CoA synthase 3 (4CL3) identical to SP|Q9S777
           4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3)
           (4-coumaroyl-CoA synthase 3) {Arabidopsis thaliana}
          Length = 495

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 285 TSSGDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGRGCLRGQQRQDQFKSQLEIHSAV 464
           T SG C  V     +    +K+++    L+   +  G  C+RGQQ   ++ +  E  SA 
Sbjct: 379 TKSGSCGTV-----VRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSAT 433

Query: 465 GEQQGLL 485
            +++G L
Sbjct: 434 IDEEGWL 440


>At1g65060.1 68414.m07375 4-coumarate--CoA ligase 3 /
           4-coumaroyl-CoA synthase 3 (4CL3) identical to SP|Q9S777
           4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3)
           (4-coumaroyl-CoA synthase 3) {Arabidopsis thaliana}
          Length = 561

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 285 TSSGDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGRGCLRGQQRQDQFKSQLEIHSAV 464
           T SG C  V     +    +K+++    L+   +  G  C+RGQQ   ++ +  E  SA 
Sbjct: 379 TKSGSCGTV-----VRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSAT 433

Query: 465 GEQQGLL 485
            +++G L
Sbjct: 434 IDEEGWL 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,444
Number of Sequences: 28952
Number of extensions: 236892
Number of successful extensions: 619
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)