Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0677
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    32   0.092
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   6.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.0  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 340 RFIYFLIFLNEFFRCDLNSTNSVNIVLALRNSV 242
           +FIYF I +  ++RC++  ++  N++L   N V
Sbjct: 551 KFIYFRICITNYYRCNVRDSSIYNVLLCCTNHV 583


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 686 PQSQILGTHDNPAIRGLLSSPQYLNKSPLKYKGTS*SSRSFFLLGCSPKLLS 531
           P+SQ+   H + + R L+S+P     +  K   +  +SR   L G    L S
Sbjct: 198 PESQLSSLHPSSSRRHLISTPHVNRGTQFKRSSSCRNSRQPLLSGVDKHLTS 249


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 527 FLIAVLGSTQEEKNS*RTMMFLYILGVTCLNIVVKRGDPLSL 652
           FL+ +  +    KN  +  + + I+ VT L + V  G PL++
Sbjct: 468 FLVRLKSNDSSSKNKGQEFLQILIVSVTLLVVAVPEGLPLAV 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,734
Number of Sequences: 5004
Number of extensions: 57678
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)