Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0677
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0149 - 20636801-20637044,20637859-20639180                       46   3e-05
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485...    46   3e-05
11_01_0699 - 5757410-5757458,5757760-5757831,5758084-5758152,575...    29   4.8  
08_02_0648 - 19694538-19696569,19697151-19697998                       28   6.3  
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    28   8.3  
01_06_1540 - 38111557-38111985,38112087-38112311,38112494-381128...    28   8.3  

>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%)
 Frame = +1

Query: 496 ENHHYDSPLYIFDSSFGEHPRRKKLLEDYDVPLYFRGDLFKYCGEER 636
           +N   + PLY+FD+ F E  +  ++  DY+VP YFR DLF   GEER
Sbjct: 278 DNVQEERPLYLFDAKFTE--KVPEMGRDYEVPAYFREDLFGVLGEER 322



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 338 PVVITDVQTNWKANYKWTLDRLVKKYRNQKFKCGEDNDGYSVKMKMKYYVEY 493
           PV++     +W A  KWT + L+K    ++F  G       V M +  Y++Y
Sbjct: 231 PVLLEGCLESWPALQKWTREHLLKVSAGKEFAVG------PVSMTLDRYLQY 276


>03_03_0206 +
           15447054-15447181,15448243-15448298,15448373-15448515,
           15448630-15448827,15448901-15449100,15449585-15449684,
           15449769-15450350,15450434-15450556,15451028-15451108,
           15451188-15451495,15451577-15451816,15452261-15452345,
           15452429-15452606,15453053-15453227,15453826-15453982
          Length = 917

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/49 (46%), Positives = 28/49 (57%)
 Frame = +1

Query: 496 ENHHYDSPLYIFDSSFGEHPRRKKLLEDYDVPLYFRGDLFKYCGEERRP 642
           E  H + PLYIFD  FGE      LLEDY VP  F+ D F+    ++RP
Sbjct: 161 ELQHDEDPLYIFDDKFGESA--PTLLEDYSVPHLFQEDFFEIMDYDQRP 207



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 338 PVVITDVQTNWKANYKWTLDRLVKKYRNQKFKCGEDNDGYSVKMKMKYYVEYM 496
           PV++T +   W A  KWT  +L   Y    F+  +      +KMK+K YV YM
Sbjct: 109 PVLLTKLAETWPARTKWTAQQLTHDYGEVPFRISQ-RSPQKIKMKLKDYVFYM 160


>11_01_0699 -
           5757410-5757458,5757760-5757831,5758084-5758152,
           5758329-5758477,5758568-5758699,5758784-5759109,
           5759330-5759399,5759684-5759738,5760322-5760377,
           5760500-5760700,5761466-5761651,5761756-5761906,
           5761978-5762206,5762321-5762582,5762858-5762959
          Length = 702

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 192 ELVDKHQWTILKYHNNFTEFLSARTMLTELVLFKSHLKN 308
           +L+ + QW ++ YH+ F    +  + + ++  FK+H  N
Sbjct: 442 KLIARKQWLVVGYHDGFIRVYTYESPVQQVKRFKAHSWN 480


>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 310 EFFRCDLNSTNSVNIVLALRNSVKL 236
           ++ RC   S NS+N+VL L N +KL
Sbjct: 677 QYLRCFNCSKNSINVVLELGNIIKL 701


>06_03_0742 +
           24027506-24027721,24028835-24029004,24029893-24030052,
           24030162-24030455,24031490-24031717,24031827-24032006,
           24032079-24032238,24032591-24032617,24033426-24033613,
           24034269-24034532,24035123-24035218,24035311-24035399,
           24035473-24035620,24035842-24036051,24036141-24036440,
           24037906-24038248,24038747-24038952,24039071-24039273,
           24040021-24040117,24040148-24040222,24040328-24040602,
           24041116-24041256,24041469-24042339,24042481-24042520,
           24042605-24043050
          Length = 1808

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 686 PQSQILGTHDNPAIRGLLSSPQYLN 612
           P  Q+L  HDN  I+G++   Q+ N
Sbjct: 854 PSEQVLYVHDNELIKGMIDKAQFGN 878


>01_06_1540 -
           38111557-38111985,38112087-38112311,38112494-38112854,
           38112965-38113058,38113136-38113369,38113891-38113945
          Length = 465

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
 Frame = -2

Query: 466 LNTIAIIVFTTLEFLIPIFFNKSV*S-------PLVICFPVSLHISYD 344
           L T+ +I  T +  +IP FFN  +         PL + FP+S+HI+ +
Sbjct: 372 LRTVVVIATTVVAMMIP-FFNAVLGLLGAFSFWPLTVYFPISMHIAQE 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,235,869
Number of Sequences: 37544
Number of extensions: 325916
Number of successful extensions: 668
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)