Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0677
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     32   0.39 
SB_28697| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_24185| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-08)                 31   0.91 
SB_3102| Best HMM Match : TehB (HMM E-Value=8.1)                       29   2.8  
SB_23928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_48684| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-05)                 28   8.5  
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 338 PVVITDVQTNWKANYKWTLDRLVKKYRN 421
           PV+ITD   +W A  KWT + L  KY N
Sbjct: 320 PVIITDAIKHWPAIQKWTNEFLRAKYSN 347


>SB_28697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +2

Query: 338 PVVITDVQTNWKANYKWTLDRLVKKYRNQKFKC----GEDNDGYSVKMKMKYYVEY 493
           PV+ITD+  +WKA   W+ +   K Y +QK       G  N   S+ +  K + E+
Sbjct: 64  PVLITDILPSWKA-ANWSKEFFAKNYGDQKMFMKAVQGTMNQAESLAVNAKLFAEH 118


>SB_24185| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-08)
          Length = 774

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 556 LGAPQNCYQKYTVDYHNGGSHIFYIILHFHLNTIAIIVFTTLEFLIPIFFN 404
           +G P + YQK  V  +  G HI  ++ H  LN     +F ++  L+ +  N
Sbjct: 190 MGVPNDVYQKLDVYVNLTGVHILVLVTHVCLNIAYKRIFVSIISLVTLLGN 240



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 556 LGAPQNCYQKYTVDYHNGGSHIFYIILHFHLN 461
           +G P + YQK  V  +  G HI  ++ H  LN
Sbjct: 339 MGVPNDVYQKLDVYVNLTGVHILVLVTHVCLN 370


>SB_3102| Best HMM Match : TehB (HMM E-Value=8.1)
          Length = 168

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 257 CKD--NVDRISAIQVTPXXXXXXXXXXXXPVVITDVQTNWKANYKWTLDRLVKKY 415
           C+D   V+R+S   +TP            PVVI D   NW A+  ++ D   K Y
Sbjct: 68  CRDIHKVERVS--NITPQEFAKKYAYSARPVVIEDGMKNWTASEHFSFDFFKKVY 120


>SB_23928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 356 VQTNWKANYKWTLDRLVKKYRNQKF 430
           +Q NW + Y+ T +R+++ Y  +KF
Sbjct: 4   LQCNWMSFYRITFNRVIRHYHKEKF 28


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 520 VDYHNGGSHIFYIILHFHLNTIAIIVFTTLEFLIPIFFNKSV*SPLVICFPVSLH 356
           + YH+   H F+    FH+ T  II+FT       I    SV + ++  +  + H
Sbjct: 574 IHYHHCQHHYFH---RFHITTTTIIIFTITSTFTAIIIITSVTTIIINTYATNHH 625


>SB_48684| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-05)
          Length = 276

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 556 LGAPQNCYQKYTVDYHNGGSHIFYIILHFHLN 461
           +G P + YQK  V  +  G HI  ++ H  LN
Sbjct: 190 MGVPNDVYQKLDVYVNLTGVHILVLVTHVCLN 221


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 490 IYENHHYDSPLYIFDSSFGEHPRRKKLLEDYDVPLYFRGDLFKYCGEERRPLIAGL 657
           + ENH  D PL+++ +    H       E    P     D FKY  +ERR   AG+
Sbjct: 321 VIENHSGDKPLFLYLAHQAVHVGNMD--EPLQAPKR-HVDKFKYITDERRRTFAGM 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,227,632
Number of Sequences: 59808
Number of extensions: 382586
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)