Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0677
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70849-5|AAF99922.2| 400|Caenorhabditis elegans Phosphatidylser... 90 1e-18
U70849-6|ABD63227.1| 284|Caenorhabditis elegans Phosphatidylser... 64 7e-11
Z93389-10|CAB07674.1| 417|Caenorhabditis elegans Hypothetical p... 32 0.35
Z93379-11|CAB07595.1| 417|Caenorhabditis elegans Hypothetical p... 32 0.35
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas... 30 1.4
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ... 30 1.4
U50300-5|AAC48103.2| 337|Caenorhabditis elegans Serpentine rece... 28 7.5
Z83229-3|CAB05740.3| 369|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL117207-12|CAD88220.1| 324|Caenorhabditis elegans Hypothetical... 27 9.9
>U70849-5|AAF99922.2| 400|Caenorhabditis elegans Phosphatidylserine
receptor familyprotein 1, isoform a protein.
Length = 400
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/83 (46%), Positives = 53/83 (63%)
Frame = +2
Query: 248 VPQCKDNVDRISAIQVTPXXXXXXXXXXXXPVVITDVQTNWKANYKWTLDRLVKKYRNQK 427
+P +D++ R+ +T PV+IT + NW A KWT++RL KKYRNQ
Sbjct: 44 LPPFRDSIQRVDGNNLTVEEFRRDFERPRIPVIITGLTDNWAAKDKWTVERLSKKYRNQN 103
Query: 428 FKCGEDNDGYSVKMKMKYYVEYM 496
FKCGED++G SV+MKMKYY +YM
Sbjct: 104 FKCGEDDNGNSVRMKMKYYHDYM 126
Score = 64.5 bits (150), Expect = 7e-11
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +1
Query: 499 NHHYDSPLYIFDSSFGEHPRRKKLLEDYDVPLYFRGDLFKYCGEERRP 642
N+ DSPLYIFDSSF E + KKL EDY VP +F DLF Y +++RP
Sbjct: 128 NNKDDSPLYIFDSSFAERRKTKKLSEDYSVPKFFEDDLFHYADDKKRP 175
>U70849-6|ABD63227.1| 284|Caenorhabditis elegans Phosphatidylserine
receptor familyprotein 1, isoform b protein.
Length = 284
Score = 64.5 bits (150), Expect = 7e-11
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +1
Query: 499 NHHYDSPLYIFDSSFGEHPRRKKLLEDYDVPLYFRGDLFKYCGEERRP 642
N+ DSPLYIFDSSF E + KKL EDY VP +F DLF Y +++RP
Sbjct: 12 NNKDDSPLYIFDSSFAERRKTKKLSEDYSVPKFFEDDLFHYADDKKRP 59
>Z93389-10|CAB07674.1| 417|Caenorhabditis elegans Hypothetical
protein F21H7.10 protein.
Length = 417
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 370 PVSLHISYDYRFIYFLIFLNEFFRCDLNSTNSVNIVLALRNS 245
P+S+ I DY L +L E RCD++ +N+ A R S
Sbjct: 116 PISIGIFVDYHSYNVLEYLAEVHRCDVSFRRKMNVHFAFRRS 157
>Z93379-11|CAB07595.1| 417|Caenorhabditis elegans Hypothetical
protein F21H7.10 protein.
Length = 417
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 370 PVSLHISYDYRFIYFLIFLNEFFRCDLNSTNSVNIVLALRNS 245
P+S+ I DY L +L E RCD++ +N+ A R S
Sbjct: 116 PISIGIFVDYHSYNVLEYLAEVHRCDVSFRRKMNVHFAFRRS 157
>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
protein.
Length = 1158
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 506 IMIVHCIFLIAVLGSTQEEKNS*RTMMFLYILGVTCLNIVVKRGDPLSL 652
++I HCI A+ G + E + + F+ I+GVT L I V G PL++
Sbjct: 341 LIIRHCISKYAIEGKSFEASDISHFVNFI-IIGVTVLVIAVPEGLPLAI 388
>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
protein R05C11.3 protein.
Length = 1158
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 506 IMIVHCIFLIAVLGSTQEEKNS*RTMMFLYILGVTCLNIVVKRGDPLSL 652
++I HCI A+ G + E + + F+ I+GVT L I V G PL++
Sbjct: 341 LIIRHCISKYAIEGKSFEASDISHFVNFI-IIGVTVLVIAVPEGLPLAI 388
>U50300-5|AAC48103.2| 337|Caenorhabditis elegans Serpentine
receptor, class t protein18 protein.
Length = 337
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 506 IMIVHCIFLIAVLGSTQEEKNS*RTMMFLYILGV 607
I+I++ I LIA+ S Q K + +TMMFL I V
Sbjct: 65 ILILYSICLIAIAKSEQMLKPAYKTMMFLGICDV 98
>Z83229-3|CAB05740.3| 369|Caenorhabditis elegans Hypothetical
protein F54F11.3 protein.
Length = 369
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 479 YYVEYMRTTIMIVHCIFLIAVLGSTQEEKNS*RTMMFLYILGVTCLNIVV 628
+Y+ M TT++++ A T EK S + F+ ++G T N+V+
Sbjct: 136 HYILSMITTLLVMSIERSFACYFLTDYEKKSRNGLFFMLVVGQTSTNLVM 185
>AL117207-12|CAD88220.1| 324|Caenorhabditis elegans Hypothetical
protein Y60A3A.22 protein.
Length = 324
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = -2
Query: 502 GSHIFYIILHFHLNTIAIIVFTTLEFLIPIF--FNKSV*SPLVICFPVSLHISYDYRFIY 329
G+ +Y++L + ++A I TTL ++P++ F S L + VS H ++
Sbjct: 42 GAFRYYLMLFQVVCSLADITITTLSSIVPLYPLFAISSYGILALWLDVSAHYCLINVGVW 101
Query: 328 FLIFLNEFFRCDLNSTNSVNIVLALRNSVKLLWYF 224
+ + C ++ +++ + K + YF
Sbjct: 102 AYLEMESLLLCFFKKHQTIAVIIDVHVIPKFIPYF 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,403
Number of Sequences: 27780
Number of extensions: 320102
Number of successful extensions: 930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -