Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0677
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78280.1 68414.m09122 transcription factor jumonji (jmjC) dom...    44   7e-05
At5g06550.1 68418.m00739 transcription factor jumonji (jmjC) dom...    43   2e-04
At1g69120.1 68414.m07909 floral homeotic protein APETALA1 (AP1) ...    29   4.0  
At5g59750.1 68418.m07489 riboflavin biosynthesis protein, putati...    28   6.9  
At1g59885.1 68414.m06746 hypothetical protein                          27   9.2  

>At1g78280.1 68414.m09122 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam PF00646: F-box
           domain; contains Pfam PF02373: jmjC domain; similar to
           apoptotic cell clearance receptor PtdSerR (GI:11037740)
           [Mus musculus]
          Length = 916

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +2

Query: 338 PVVITDVQTNWKANYKWTLDRLVKKYRNQKFKCGEDNDGYSVKMKMKYYVEYMRT 502
           PV+++ +  +W A+  WT+D+L +KY    F+  + +    + MK K Y+ YM+T
Sbjct: 147 PVLLSGLADSWPASNTWTIDQLSEKYGEVPFRISQRSPN-KISMKFKDYIAYMKT 200



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +1

Query: 511 DSPLYIFDSSFGEHPRRKKLLEDYDVPLYFRGDLFKYCGEERRP 642
           + PLY+FD  FGE     +LL+DY VP  F+ D F+   +E RP
Sbjct: 204 EDPLYVFDDKFGE--AAPELLKDYSVPHLFQEDWFEILDKESRP 245


>At5g06550.1 68418.m00739 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam PF00646: F-box
           domain; contains Pfam PF02373: jmjC domain; similar to
           apoptotic cell clearance receptor PtdSerR (GI:11037740)
           [Mus musculus]
          Length = 319

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +1

Query: 511 DSPLYIFDSSFGEHPRRKKLLEDYDVPLYFRGDLFKYCGEER 636
           + PLY+FD  F E  +   L  +YDVP+YFR DLF   G ER
Sbjct: 84  ERPLYLFDPKFAE--KVPVLDSEYDVPVYFREDLFGVLGNER 123



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +2

Query: 260 KDNVDRISAIQVTPXXXXXXXXXXXXPVVITDVQTNWKANYKWTLDRLVKKYRNQKFKCG 439
           +DN+ R+  I V              PV++      W A  KW+ D L K   + +F  G
Sbjct: 8   RDNITRVRGISVEDFITKFEEPNK--PVLLEGCLDGWPAIEKWSRDYLTKVVGDVEFAVG 65

Query: 440 EDNDGYSVKMKMKYYVEY 493
                  V+MK++ Y  Y
Sbjct: 66  ------PVEMKLEKYFRY 77


>At1g69120.1 68414.m07909 floral homeotic protein APETALA1 (AP1) /
           agamous-like MADS box protein (AGL7) identical to
           SP|P35631 Floral homeotic protein APETALA1 (AGL7
           protein) {Arabidopsis thaliana}
          Length = 256

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 350 TDVQTNWKANYKWTLDRLVKKYRNQKFKCGEDNDGYSVK 466
           +DV TNW   Y     ++    RNQ+   GED    S K
Sbjct: 85  SDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPK 123


>At5g59750.1 68418.m07489 riboflavin biosynthesis protein, putative
           similar to SP|P50855 Riboflavin biosynthesis protein
           ribA [Includes: GTP cyclohydrolase II (EC 3.5.4.25);
           3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP
           synthase)] {Actinobacillus pleuropneumoniae}; contains
           Pfam profiles PF00925: GTP cyclohydrolase II, PF00926:
           3,4-dihydroxy-2-butanone 4-phosphate synthase
          Length = 509

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 532 DSSFGEHPRRKKLLEDYDVPLYFRGDLFKYCGEERRPLIAGLSWVPKIWDWGSYGSF 702
           D S    P  KKL  ++D+P+    DL +Y   +R  L+  ++       WG + ++
Sbjct: 270 DGSMASLPYMKKLATEHDIPIVSLTDLIRY-RRKRDKLVERITVSRLPTKWGLFQAY 325


>At1g59885.1 68414.m06746 hypothetical protein
          Length = 129

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = -2

Query: 571 GVFFFLGAPQNCYQKYTVDYHNGGSHIFYIILHFHLNTIAIIVFTTLEFLIPIFFNKSV* 392
           GVFFF         K T+   +  + I      FHL T     FTT    +P+   KS+ 
Sbjct: 10  GVFFFPTKGSFITTKGTIKIKSNSNGINGSF--FHLTTNDFFFFTTKSLSLPLLATKSLS 67

Query: 391 SPLVICFPVSL 359
           S L+    +SL
Sbjct: 68  SALLATKSLSL 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,396,044
Number of Sequences: 28952
Number of extensions: 284603
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)