Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0676
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   4.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   4.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.5  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   6.0  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 114 DVTLKEPNVSITIADFRNPFRKHKYETIQHAELC 13
           +  ++E   ++ +A  +    KHK  TI+H E C
Sbjct: 112 EAKIREAAKNLMVAQAKEKKGKHKQSTIEHYEQC 145


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 19  LSMLYSFILVFSERIPEISDGNTDIRFF 102
           +S L SF+L+FS  +   +DG  +I+FF
Sbjct: 103 VSFLLSFLLLFSLFLLIPNDGRVNIKFF 130


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 459 ARKVEESAVAXHPVR--ENRADRXDGSEAIDGSXKRRDHASSTDRRM 325
           + ++ ES  A  PV   EN  +  D    +DG     DH+S T+  +
Sbjct: 72  SERIPESQSAAEPVLKVENSENDLDEKLVLDGQHVEGDHSSDTEEEV 118


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 400 VRPVLADWVXRDRGFLNFSGNADAYRPWLFSA 495
           V P+  D    ++  L F G +D YRP  FS+
Sbjct: 538 VMPMATDATFTEKLHLLFKGKSDIYRPKKFSS 569


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 128 VRSARSRSGRSEDTAPSPSXRRACSPGRHPGTWXRRRSLPI 250
           VRS+ S S  S+DT PS         G +  T  R R+L +
Sbjct: 326 VRSSLSSSSLSKDTEPSTVDMHIAFTGLNKPTIERERNLKL 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,196
Number of Sequences: 5004
Number of extensions: 24160
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)