Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0676
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0858 + 28800691-28801155,28801293-28801515,28802555-28803048 31 0.50
10_08_0543 - 18649894-18650233,18651446-18651981 30 1.1
09_03_0006 + 11426346-11426420,11426733-11427452 30 1.1
04_03_1017 + 21747044-21748051 29 2.0
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 29 3.5
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308... 28 6.1
03_01_0646 + 4742398-4742994,4743681-4744085 28 6.1
06_01_0833 - 6288410-6288564,6289948-6290239,6290578-6290670,629... 27 8.1
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 27 8.1
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 27 8.1
>04_04_0858 + 28800691-28801155,28801293-28801515,28802555-28803048
Length = 393
Score = 31.5 bits (68), Expect = 0.50
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 95 GSFSVTSRRCDVRSARSRSGRSEDTAPSPSXRRACSPGRHPGTWXRRRS 241
G + R D SA + SGR + ++P+ S RR GRH G R+S
Sbjct: 103 GEGDEVNSRVDSCSAAAVSGRDDGSSPAMSPRRRSWEGRHAGGVAGRQS 151
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 286 APRRRCSSXAEAPHSAVRAGGVVSPLGGPVDG 381
A RRR +S P +R GGVV GPV G
Sbjct: 21 AARRRAASSVYLPGRPLRGGGVVRCSAGPVSG 52
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 68 KSAMVILTLGSFSVTSRRCDVRSARSRSGRSEDTAPSPSXRRACSPGRHPGTWXRRRS 241
K A+V+L S + R C +R S P+ RR C+ RH T RRR+
Sbjct: 30 KPAIVVLAAPPASSSQRHCAIRPVPPSSFSRRRRRRPPALRRCCAAWRH-RTRKRRRT 86
>04_03_1017 + 21747044-21748051
Length = 335
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 134 SARSRSGRSEDTAPSPSXRRACSPGRHPGTWXRRRSLP 247
S R S D +PS RRA SP P T RR + P
Sbjct: 196 STPPRRAASPDYSPSTPPRRAASPDYSPSTPPRRAASP 233
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 146 RSGRSEDTAPSPSXRRACSPGRHPGTWXRRRSLP 247
R S D +PS RRA SP P T RR + P
Sbjct: 186 RRAASPDYSPSTPPRRAASPDYSPSTPPRRAASP 219
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 134 SARSRSGRSEDTAPSPSXRRACSPGRHPGTWXRRRSLP 247
S R+ + + T SP RRA SP P T RR + P
Sbjct: 168 SRRAAASSPDYTPESPPRRRAASPDYSPSTPPRRAASP 205
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 134 SARSRSGRSE---DTAPSPSXRRACSPGRHPGTWXRRRS 241
S RSR S+ D+A SPS A SP R P R RS
Sbjct: 21 SRRSRDASSDPDPDSASSPSPSSASSPSRSPDRRSRSRS 59
>11_01_0405 +
3079275-3079622,3079816-3079903,3081411-3081543,
3081642-3082395
Length = 440
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 268 SLXGGRAPRRRCSSXAEAPHSAVRAGGVV 354
++ G R PRR C P S++ AGG V
Sbjct: 245 NVFGTRGPRRMCCLMHSIPASSLEAGGTV 273
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 102 LV*RRGAATSAARDRGQGDPRI 167
LV RRG SAAR RG+G P +
Sbjct: 141 LVVRRGQGPSAARRRGEGPPLV 162
>06_01_0833 -
6288410-6288564,6289948-6290239,6290578-6290670,
6290784-6290857,6290976-6291045,6291140-6291217,
6291329-6291430,6291583-6291645,6291802-6291951,
6292037-6292180,6292266-6292499
Length = 484
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 280 GRAPRRRCSSXAEAPHSAVRAGGVVSPLGGPVDGLRTVXAVRPVLADWV 426
GRAP C A S++ GG + V + V A+RP A WV
Sbjct: 6 GRAPLFACRGAAAVSASSMLGGGGAAYQAAVVAHVAPVPAIRP-CASWV 53
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 167 TAPSPSXRRACSPGRHPGTWXRRRS 241
TAPSP R +P R PG+ RRRS
Sbjct: 293 TAPSP-IRHGGTPSRRPGSPIRRRS 316
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -1
Query: 222 VPGWRPGEQARRXEGDGAVSSDRPD-------RDRALRTSQRRDVTLKEPNVSITIADFR 64
+P ++PGE+ D VSS D + + Q+ D +LK+ SI F
Sbjct: 244 LPAFKPGEKVMTSLPDRGVSSSSSDPLCEGNIAPCSSSSEQKEDCSLKQSKTSILSCVFN 303
Query: 63 NPF 55
+PF
Sbjct: 304 SPF 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,898
Number of Sequences: 37544
Number of extensions: 226624
Number of successful extensions: 929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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