Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0676
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16775| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)                 28   4.8  
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)                   28   4.8  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_16775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 331 AVRAGGVVSPLGGP-VDGLRTVXAVRPVLADWVXRDRGFLNFSGNADAYRPWLFSAG 498
           AV AG   +  GGP V G+      RPV+A     DRG    +G  DAYR     AG
Sbjct: 35  AVVAGMGDADRGGPIVAGMGDADRGRPVVAGMGDADRGRPVVAGMGDAYRGGAVVAG 91


>SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)
          Length = 485

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 153 PDRDRALRTSQRRDVTLKEPNVSITIADFRNPFRKHKYETIQHAEL 16
           PDRD   R   +R  +  +P++S   A    P R H + T++ + L
Sbjct: 212 PDRDPTKRPQLKRQTSKSDPDLSQLRASSTPPPRDHFHNTLKTSSL 257


>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
          Length = 1562

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 289 PRRRCSSXAEAPHSAVRAGGVVSPLGGPVDGLRTVXAVRPVLADW 423
           P    +S    P S     G+V P   P+ GLRT  +V P+ +DW
Sbjct: 691 PLSFATSCRTPPSSLNSVHGLVQP---PLSGLRTCISVFPLRSDW 732


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 283  RAPRRRCSSXAEAPHSAVRAGGVVSPL 363
            RA R +    A+ P +A+R GGV  PL
Sbjct: 1807 RAERHKHFGNADVPRTAIRMGGVSEPL 1833


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,634
Number of Sequences: 59808
Number of extensions: 219114
Number of successful extensions: 758
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)