Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0676
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    30   1.0  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    30   1.0  
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical...    27   9.5  
AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 153 PDRDRALRTSQRRDVTLKEPNVSITIADFRNPFRKHKYET-IQHAE 19
           P +D  L+TS R  V+   PNV + + +    FRK  +E  ++H E
Sbjct: 515 PGKDLLLQTSMRDHVSSMMPNVMLGVVEGSALFRKWYFEAEVEHIE 560


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 153 PDRDRALRTSQRRDVTLKEPNVSITIADFRNPFRKHKYET-IQHAE 19
           P +D  L+TS R  V+   PNV + + +    FRK  +E  ++H E
Sbjct: 636 PGKDLLLQTSMRDHVSSMMPNVMLGVVEGSALFRKWYFEAEVEHIE 681


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +1

Query: 256 GVRXSLXGGRAPRRRCSSXAEAPHSAVRAGGVVSPLGGP 372
           GV   L GG  P   C + A  P  A  A G   P G P
Sbjct: 116 GVTIGLTGGNGPCITCPAGAPGPAGAPGAPGPQGPSGAP 154


>Z70756-4|CAA94788.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.4 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +1

Query: 256 GVRXSLXGGRAPRRRCSSXAEAPHSAVRAGGVVSPLGGP 372
           GV   L GG  P   C + A  P  A  A G   P G P
Sbjct: 116 GVTIGLTGGNGPCITCPAGAPGPAGAPGAPGPQGPSGAP 154


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 146 RSGRSEDTAPSPSXRRACSPGRHPGTWXRRRS 241
           R  RS   + SP+ RR  SP + P    RRRS
Sbjct: 438 RRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRS 469


>AF000263-10|AAM22070.1|  163|Caenorhabditis elegans Hypothetical
           protein T08B2.5d protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = +2

Query: 98  SFSVTSRRCDVRSARSRSGRSEDTAPSPSXRRACSPGRHPGTWXRRRSLPI 250
           S++  +RR   RS   R GRS   +PS   RR  S  R      RRR  PI
Sbjct: 111 SWAREARRSRSRSRDRRGGRSRSRSPS---RRRTSRDRRDDRSSRRRRGPI 158


>AF000263-9|AAO21391.2|  184|Caenorhabditis elegans Hypothetical
           protein T08B2.5e protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = +2

Query: 98  SFSVTSRRCDVRSARSRSGRSEDTAPSPSXRRACSPGRHPGTWXRRRSLPI 250
           S++  +RR   RS   R GRS   +PS   RR  S  R      RRR  PI
Sbjct: 132 SWAREARRSRSRSRDRRGGRSRSRSPS---RRRTSRDRRDDRSSRRRRGPI 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,833,354
Number of Sequences: 27780
Number of extensions: 148447
Number of successful extensions: 411
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)