Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0676
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02425.1 68417.m00328 expressed protein                             33   0.18 
At4g36980.1 68417.m05240 expressed protein                             27   6.8  

>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 95  GSFSVTSRRCDVRSARSRSGRSEDTAPSPSXRRACSPGRH 214
           GSF + +R+   R++RS SGRS D +     RR CS G H
Sbjct: 90  GSFRLVARKRRRRNSRSVSGRSSDRS---GTRRCCSIGAH 126


>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 119 RCDVRSARSRSGRSEDTAPSPSXRRACSPGRHPGTWXRRRSLP 247
           R   RS RSR   S   + SPS   + SP RH       R LP
Sbjct: 504 RSGSRSRRSRRHSSRSRSRSPSRSLSRSPKRHADALHLIRGLP 546


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,750
Number of Sequences: 28952
Number of extensions: 144260
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)