Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0675
         (796 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.1  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   3.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   6.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQ 237
           L K     N  +R ++C  E E+    SK   N  G+K   L++
Sbjct: 320 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 363


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 LRKHGFEEN-LMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQ 237
           L K     N  +R ++C  E E+    SK   N  G+K   L++
Sbjct: 212 LEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 255


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 85  TRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTS 189
           TR  L H    H      +  W+ +V  ES  DTS
Sbjct: 248 TRLFLTHRKPFHPASTQSLSRWIKMVLAESGVDTS 282


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 584 IITLYKFRLTFYVIENVKKTRTKRTDCVF 670
           ++TL   R    ++++  +TR K  +CVF
Sbjct: 10  LVTLATARNKAPLLDDGTRTRNKAAECVF 38


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 164 STRHTQFLMRFSSKPCFLSSCTRPHLVNVLASEPTQ 57
           S   T  L R   +  +LS+  R HL +++   PTQ
Sbjct: 48  SKAQTYELERRFRQQRYLSAPEREHLASIIRLTPTQ 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,887
Number of Sequences: 336
Number of extensions: 3184
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)