Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0675
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             30   1.5  
At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger) fa...    29   3.6  
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat...    28   8.2  
At1g11925.1 68414.m01377 stigma-specific Stig1 family protein co...    28   8.2  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 84  HEMRSRA*AEEAWLRRKSHEELGMSGRAR 170
           H     A  EEAWLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 240

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +3

Query: 231 VPDQRPVLCSKGASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRHR--FDAWYGWK--NH 398
           +P ++ V  S+  S  + C V   D     I    +C   + K HR   DAW+  K  N 
Sbjct: 56  IPPEKEVSLSRNGSSHEQCRVCLQDKEEVLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQ 115

Query: 399 CQ 404
           C+
Sbjct: 116 CE 117


>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1073

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 450 SARLSIRSPRNRTVCLVRVFNVPDS 524
           S  L++ SP N +VC  R FN+ DS
Sbjct: 140 SRDLTLSSPTNSSVCASRDFNIADS 164


>At1g11925.1 68414.m01377 stigma-specific Stig1 family protein
           contains Pfam profile PF04885: Stigma-specific protein,
           Stig1
          Length = 121

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 219 GLRIVPDQRPVLCSKGASPGKD-CNVKCSDLLTDDITKAAKCAK 347
           G  +  D+   +C    SPG++ C  KC DL T+ +    +C K
Sbjct: 44  GATLTCDKSSKVCRLKGSPGRNCCRKKCVDLRTNKL-NCGRCGK 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,892
Number of Sequences: 28952
Number of extensions: 282228
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)