Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0674
         (480 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FBY9 Cluster: Putative uncharacterized protein; n=1; ...    35   1.1  
UniRef50_Q0HS89 Cluster: Type IV pilin biogenesis protein, putat...    33   4.4  
UniRef50_UPI0000E4A76C Cluster: PREDICTED: hypothetical protein;...    32   7.7  

>UniRef50_A2FBY9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 331

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = +3

Query: 12  YIFHVYSKNAILFYKDDVESWNAPTTASMQLFEYS 116
           YIF +  K+A+L YKD + + N+  +A+M++ E+S
Sbjct: 102 YIFSIDPKSALLLYKDTLTNKNSNYSAAMEMLEFS 136


>UniRef50_Q0HS89 Cluster: Type IV pilin biogenesis protein, putative
            precursor; n=1; Shewanella sp. MR-7|Rep: Type IV pilin
            biogenesis protein, putative precursor - Shewanella sp.
            (strain MR-7)
          Length = 1216

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 28   ILKMQFYFTKMTSSLGTLPQPHRCSCLSIPKLRTCLERGNPINXSNNVY 174
            I+K + YFT  T + G  P P  CS  S+ KL T L+    +  S N Y
Sbjct: 1103 IIKGKVYFTSFTPT-GPAPDPESCSVASVGKLYT-LDLHTGLRFSQNYY 1149


>UniRef50_UPI0000E4A76C Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 844

 Score = 31.9 bits (69), Expect = 7.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 34  KMQFYFTKMTSSLGTLPQPHRCSCLSIPKLRTCLERGNPINXSNNVYQ 177
           ++Q   TKM S++  LP   R  CL++P L     RG+ I     +Y+
Sbjct: 716 RVQKRATKMISTMKHLPYIERLKCLNLPSLEYRRRRGDMIQVYKIIYE 763


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,074,034
Number of Sequences: 1657284
Number of extensions: 6298336
Number of successful extensions: 15357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15355
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)