Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0674
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.2  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 48  FYKDDVESWNAPTTASMQLFEYSKAPDL 131
           FY DD   +  P   + + F Y   P+L
Sbjct: 228 FYNDDANVYILPDPYNTKFFRYRITPEL 255


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 151 WDCLARGKSGALEYSNNCIDAVVGAFQDS 65
           + CLAR  +G++   +  + AVV  + D+
Sbjct: 79  YSCLARSPAGSVHSRDVNVRAVVAQYYDT 107


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +3

Query: 12  YIFHVYSKNAILFYKDDVESWNAPTTA 92
           Y+FH Y    ++     V  W  P  A
Sbjct: 247 YLFHTYIPTCLIVIMSWVSFWIKPEAA 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,878
Number of Sequences: 438
Number of extensions: 1981
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)