Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0674
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07390.1 68415.m00846 hypothetical protein                          27   5.0  
At3g45430.1 68416.m04904 lectin protein kinase family protein co...    27   6.5  
At3g53760.1 68416.m05939 tubulin family protein similar to SP|Q9...    27   8.7  

>At2g07390.1 68415.m00846 hypothetical protein
          Length = 137

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 223 TTNIFFSTCDYEINSTRPFID 285
           TT  FFS+C YEI+ T    D
Sbjct: 66  TTRFFFSSCPYEISDTVALCD 86


>At3g45430.1 68416.m04904 lectin protein kinase family protein
           contains Pfam domains PF00138: Legume lectins alpha
           domain and PF00069: Protein kinase domain
          Length = 613

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 72  WNAPTTASM-QLFEYSKAPDLPRARQSH 152
           W+  T   + QL ++SK P +PR R  H
Sbjct: 194 WSFSTNRELSQLLDFSKLPQVPRPRAEH 221


>At3g53760.1 68416.m05939 tubulin family protein similar to
           SP|Q9SC88 Gamma-tubulin complex component 4 homolog
           {Medicago truncatula}, SP|Q9UGJ1|GCP4_HUMAN
           Gamma-tubulin complex component 4 {Homo sapiens};
           contains Pfam profile PF04130: Spc97 / Spc98 family
          Length = 745

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 94  RCSCLSIPKLRTCLER 141
           RC C  +P+LRTCL+R
Sbjct: 188 RCHC-GVPELRTCLQR 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,754,139
Number of Sequences: 28952
Number of extensions: 141603
Number of successful extensions: 387
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)