Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0673
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 45 8e-06
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 42 8e-05
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 40 3e-04
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 39 5e-04
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 38 0.001
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 37 0.003
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 31 0.19
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 28 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 1.8
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 1.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 27 1.8
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 26 4.1
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit... 26 5.4
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 5.4
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 7.2
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 45.2 bits (102), Expect = 8e-06
Identities = 24/83 (28%), Positives = 50/83 (60%)
Frame = +2
Query: 401 LFQQXEDGDTQLHIASVHGCEKSVGTLIRVCPEKSWLDVPNDYGHTPLHLAVMSGNAIIT 580
L ++ E+G++ LH+AS +G V +I K ++ N+ G+T +H A ++G+A I
Sbjct: 29 LSRRDENGNSGLHMASANGHIAVVQKIIPYL-NKEVINAQNESGNTAMHWAALNGHAEIC 87
Query: 581 RMLVIAGADIGARDCLGETPLHK 649
++L+ AG D ++ ++P+++
Sbjct: 88 KLLLEAGGDPHIKNIYEKSPIYE 110
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 521 NDYGHTPLHLAVMSGNAIITRMLVIAGADIGARDCLGETPL 643
++ G+TP+H AV G++ + ++LV G DI RD GETPL
Sbjct: 34 DENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPL 74
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/82 (34%), Positives = 42/82 (51%)
Frame = +2
Query: 398 LLFQQXEDGDTQLHIASVHGCEKSVGTLIRVCPEKSWLDVPNDYGHTPLHLAVMSGNAII 577
L+ ++ G T LH A+ G + V LI +++ L+ + YG TPLH A+ G+ +
Sbjct: 133 LIRKKDLQGQTPLHRAAAVGKIQVVKYLIS---QRAPLNTSDSYGFTPLHFALAEGHPDV 189
Query: 578 TRMLVIAGADIGARDCLGETPL 643
LV AGAD +D T L
Sbjct: 190 GVELVRAGADTLRKDSENHTAL 211
Score = 36.3 bits (80), Expect = 0.004
Identities = 25/75 (33%), Positives = 32/75 (42%)
Frame = +2
Query: 422 GDTQLHIASVHGCEKSVGTLIRVCPEKSWLDVPNDYGHTPLHLAVMSGNAIITRMLVIAG 601
G T LH A+ G V L PE + + G TPLH A G + + L+
Sbjct: 107 GQTCLHYAAGKGRLSIVQLLCDKAPEL--IRKKDLQGQTPLHRAAAVGKIQVVKYLISQR 164
Query: 602 ADIGARDCLGETPLH 646
A + D G TPLH
Sbjct: 165 APLNTSDSYGFTPLH 179
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +2
Query: 494 PEKSWLDVPNDYGHTPLHLAVMSGNAIITRMLVIAGADIGARDCLGETPLH 646
P S + N+ G + LHL G + + L AG D+ RD LG TPLH
Sbjct: 850 PYLSDFSLVNESGRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLH 900
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 515 VPNDYGHTPLHLAVMSGNAIITRMLVIAGADIGARDCLGETPL 643
V +D GHT LH A G+ + ++L+ A ADIG + L +TPL
Sbjct: 243 VIDDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPL 285
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = +2
Query: 509 LDVPNDYGHTPLHLAVMSGNAIITRMLVIAGADIGARDCLGETPLH 646
+D+ +D HTPL A GN IT L+ GAD+ A D TPLH
Sbjct: 127 VDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATDEDKMTPLH 172
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 530 GHTPLHLAVMSGNAIITRMLVIAGADIGARDCLGETPL 643
GHT LH A GN + L+ AGA++ A + L +T L
Sbjct: 237 GHTALHWAAAMGNLEMMHALLQAGANVVAVNYLQQTSL 274
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 536 TPLHLAVMSGNAIITRMLVIAGADIGARDCLGETP 640
TPLH AV NA + L+ GAD + G+TP
Sbjct: 435 TPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTP 469
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 196 TSTLIPVLLLVKYQDRVIVIYRFRDD 273
T T P+ L +Y D+V +++RF D+
Sbjct: 1102 TETSHPIRLYTRYIDKVYIMFRFTDE 1127
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 530 GHTPLHLAVMSGNAIITRMLVIAGADIGARDCLGETP 640
G T LH+A + +A + + L+ GAD RD G+ P
Sbjct: 189 GQTYLHVATKAKDAELVKWLLDNGADPYRRDKFGKLP 225
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 497 EKSWLDVPNDYGHTPLHLAVMSG-NAIITRMLVIAGADIGARD-CLGETPLHK 649
+K ++ + YG T LH+AV N+ + +L G D+ +D G T LH+
Sbjct: 41 QKLRINQKDRYGRTVLHIAVSENKNSFVRSLLQHKGIDVFVQDEESGYTALHR 93
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 509 LDVPND-YGHTPLHLAVMSGNAIITRMLVIAGADIGARDCLGETPL 643
LDVP D GH LH A + + L+ GA+ + GET L
Sbjct: 349 LDVPIDELGHAALHWAAAVAKMPLLQALIHKGANPLRGNLTGETAL 394
>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
Tom40|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 8 AFVVVRLFITRHFCVKTWFRV 70
AF VR +T+ FC WF V
Sbjct: 50 AFTGVRADVTKGFCTSPWFTV 70
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 357 RVLHRVPQTFLRCIYCSNRXRTETHNYTSPP 449
R L+ +P+T L Y SN H SPP
Sbjct: 45 RRLYNLPRTLLNSRYYSNHSHGLVHGSKSPP 75
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 278 YDEKNSEGESGVKSITDRLSQVMVSVQSPAQSTADIPPLYL 400
++ K+ +GE +++TD+ S + S +++ D+ P YL
Sbjct: 155 FERKSMQGELKERNLTDKTSTLSTSF---GETSPDVNPFYL 192
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 524 DYGHTPLHLAVMSGNAIITRMLVI 595
DY TP+ LA+ SG + + V+
Sbjct: 86 DYSQTPIRLAIRSGKKSVHKSAVV 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,573
Number of Sequences: 5004
Number of extensions: 51258
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -