Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0672
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1393 - 26245105-26246862                                         29   4.2  
09_01_0019 + 403078-404211                                             29   5.5  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   7.3  

>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 485 AIGAGITALLAPDLPSNCSSLKXLKCTHS-DYEASXESRIVIFRHYLPVPG 634
           A  A +     PD P NCS  + L    + + +A     IV   +  PVPG
Sbjct: 133 ATAAAVNGTCDPDAPLNCSDPRVLAAVKAFNAKAFFRKSIVFLSYEAPVPG 183


>09_01_0019 + 403078-404211
          Length = 377

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 719 GKSGFDSGEGX*ETATTSKEGSRRANYPLPARGGSDEK*RYG 594
           G S  DSG G  ++A   K  SRR  +      GSD   R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 166 INHYLGVLKTNKIEPRSYSIIPCTKYSSSILARFE 270
           I H L +LK  KI P   +I  C +YS   ++ F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,005
Number of Sequences: 37544
Number of extensions: 333917
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)