Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0672
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 113  RRKTNISESICQRCFHQ 63
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 668  SKEGSRRANYPLPARGGSDEK*RYG 594
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 124 NXWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 2
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 700 ESXPDFPVNRGQPWVVAETTIKVXK 774
           ES   FP   G P+V     IK+ K
Sbjct: 923 ESVHSFPTETGLPFVYTFNVIKLTK 947


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 204 RTEIIFYYSMHEIFKQHFSP 263
           ++E I  Y MH+I K+  SP
Sbjct: 257 KSEPIDAYEMHQISKKKLSP 276


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 SAAHKCNYELFNRNNFSIRYWSWNY 504
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 SAAHKCNYELFNRNNFSIRYWSWNY 504
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 SAAHKCNYELFNRNNFSIRYWSWNY 504
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 SAAHKCNYELFNRNNFSIRYWSWNY 504
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 430 SAAHKCNYELFNRNNFSIRYWSWNY 504
           S ++  NY  +N NN+    ++ NY
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 581 PRNRNEYTLNXLTRNNW 531
           PRN +EY  N L    W
Sbjct: 368 PRNIDEYNNNDLDTKKW 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,795
Number of Sequences: 438
Number of extensions: 3996
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)