Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0671
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   8.0  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.0  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 544 CLVWCCVYLLKSNKTLS 594
           C  +CC YLLKSN+T S
Sbjct: 4   CNFYCC-YLLKSNRTQS 19


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 249 TRAFVPTLSTNTNNFIQSLVDREHLVSRAXNNVYVRVPPLIE 124
           T  F   L+ NTN  I   V RE + + A   V  R+ PLI+
Sbjct: 573 TLIFAALLTKNTNLLIHISVARESIEALAHECVTRRLLPLID 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,058
Number of Sequences: 5004
Number of extensions: 42645
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)