Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0671
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 129 SAGGPERRRCSXRATLSVRG 188
           S  GP RRR S ++ LS+ G
Sbjct: 447 SMAGPIRRRISDKSALSLAG 466


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 565 RHNTKLNMRNLISSAQV 515
           RHNTK  M+ L+S   +
Sbjct: 227 RHNTKNGMKTLLSETDI 243


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 517 VNSDTTGRNVSVPIKISYD 461
           +NS T  RNV  PI  S+D
Sbjct: 176 INSTTGKRNVVTPIVQSFD 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,733
Number of Sequences: 438
Number of extensions: 3577
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)