Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0669
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   5e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   5e-08
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   8e-05
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   2e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   4e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.4  
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)                    29   3.1  
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  29   4.1  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   5.5  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)                   28   9.5  
SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 27/41 (65%), Positives = 31/41 (75%)
 Frame = +3

Query: 492 EILGSSKTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + L   + T+AKAFAK VFINQERKLE R R DT LVLT+N
Sbjct: 3   KFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 27/41 (65%), Positives = 31/41 (75%)
 Frame = +3

Query: 492 EILGSSKTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + L   + T+AKAFAK VFINQERKLE R R DT LVLT+N
Sbjct: 3   KFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 27/41 (65%), Positives = 31/41 (75%)
 Frame = +3

Query: 492 EILGSSKTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + L   + T+AKAFAK VFINQERKLE R R DT LVLT+N
Sbjct: 3   KFLDYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = +3

Query: 510 KTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + T+AKAFAK VFINQERKLE R R DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 26/35 (74%), Positives = 29/35 (82%)
 Frame = +3

Query: 510 KTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + T+AKAFAK VFINQERKLE R R DT LVLT+N
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +3

Query: 516 TSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           T+AKAFAK VFINQERKLE R R DT LVLT+N
Sbjct: 30  TTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/42 (59%), Positives = 29/42 (69%)
 Frame = +3

Query: 489 GEILGSSKTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           GEILG  KT   ++  +  FINQERKLE R R DT LVLT+N
Sbjct: 2   GEILGFRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 24/41 (58%), Positives = 28/41 (68%)
 Frame = +3

Query: 492 EILGSSKTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + L   KT   ++ AK VFINQERKLE R R DT LVLT+N
Sbjct: 3   KFLDLRKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +3

Query: 492 EILGSSKTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + L   KT   ++  + VFINQERKLE R R DT LVLT+N
Sbjct: 3   KFLDLRKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = +3

Query: 516 TSAKAFAKGVFINQERKLEVRXRLDT 593
           T+AKAFAK VFINQERKLE R R DT
Sbjct: 3   TTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +3

Query: 492 EILGSSKTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + L   KT   ++  +  FINQERKLE R R DT LVLT+N
Sbjct: 3   KFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +3

Query: 492 EILGSSKTTSAKAFAKGVFINQERKLEVRXRLDTALVLTVN 614
           + L   KT   ++  +  FINQERKLE R R DT LVLT+N
Sbjct: 3   KFLDLRKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +2

Query: 23  TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 199
           T  +   R    ++++ R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 20/42 (47%), Positives = 22/42 (52%)
 Frame = +2

Query: 74  RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 199
           R +WRASL            Y K+VAVKKLVV F    VG P
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +2

Query: 86  RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 199
           RASL            Y K+VAVKKLVV F    VG P
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42


>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +2

Query: 74  RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVGAP 199
           R    ASL            Y K+VAVKKLVV F    VG P
Sbjct: 24  RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65


>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
          Length = 111

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 134 YTKIVAVKKLVVAFVRRAVGAP 199
           Y K+VAVKKLVV F    VG P
Sbjct: 88  YIKVVAVKKLVVGFRDGTVGPP 109


>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 134 YTKIVAVKKLVVAFVRRAVGAP 199
           Y K+VAVKKLVV F    VG P
Sbjct: 89  YIKVVAVKKLVVGFRDGTVGPP 110


>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 40

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 134 YTKIVAVKKLVVAFVRRAVGAP 199
           Y K+VAVKKLVV F    VG P
Sbjct: 17  YIKVVAVKKLVVGFRDGTVGPP 38


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 183 ALSVHRIRGDTDTFADISSVSRRSKNAGSISKSYR 287
           AL VH +R D   FADI+  S     A  ++  YR
Sbjct: 260 ALFVHHVRCDASLFADIALPSEEVARAAMLALEYR 294


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 172 CNYELFNRNNFSIRYWSWNYRGCWH 98
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 763 STPGWXPTGQFPLSFSXATXLPPGVQNLWFPGKXPA 656
           S  GW   G++P   S    LPP +    +PG  P+
Sbjct: 778 SPSGWQGRGRYPSQPSPTDVLPPTLPQAPYPGGPPS 813


>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
          Length = 444

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 234 SSVSRRSKNAGSISKSYRGALR*VSRWADNFTLNKLECSKR 356
           S  SRR    G+ S   R ALR    W D+   + L+C +R
Sbjct: 164 SPFSRRLSPTGTTSGVARDALRPTRDWRDSPLSSSLQCQRR 204


>SB_24390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 211 SPRMRCTDSAAHKCNYELFNRNNFSIRYW-SWNY 113
           S R+RCT S + KC     + + F    W S+NY
Sbjct: 147 SYRLRCTSSTSWKCRLTSISESYFKGNNWFSYNY 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,409,401
Number of Sequences: 59808
Number of extensions: 434921
Number of successful extensions: 1048
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)