Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0666
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   1.2  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    28   1.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   2.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   2.8  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   3.7  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   3.7  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   8.6  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 304  NADGIKCEPQEAEEPRAMQKVPSLSDLSDPEASLDIPSQVPPLTP 438
            NA   + +    +   A+    S  DLSDP  S+D  S  PPL P
Sbjct: 1773 NAPSFRPQMGSFDAEHAVGATFSQDDLSDPARSVDSDSVSPPLPP 1817


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = +1

Query: 292 EGGGNADGIKCEPQE-----AEEPRAMQKVPSLSDLS-DPEASLDIPSQV-PPLTPGTNK 450
           E   NA G+  EP       +  P++  ++ +   ++ + E S + PS V PP  PG N 
Sbjct: 239 EPSANAHGLGIEPASKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSLVNPPTDPGLNS 298

Query: 451 KMAEALKATFASWEKEQLRPACRKIQDSGA 540
           K+A+ +   F   E  Q   A     D  A
Sbjct: 299 KIAQLVSMGFDPLEAAQALDAANGDLDVAA 328


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 353 ARGSSASWGSHFMPSALPPP-SSHKSSLRLNETCSLEEA 240
           +RGS A++ + + P+A+PPP   +  S+ L  +   EE+
Sbjct: 199 SRGSPANYNTPYYPTAIPPPIEEYSPSVSLPTSPVAEES 237


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 370 SLSDLSDPEASLDIPSQVPPLTP---GTNKKMAEALKATFASWEKEQL 504
           S +DL     SL +P    P+ P   G N+K  +++ +    W+KE L
Sbjct: 27  SQADLKKYSESLCLPKTSFPIKPNVKGNNEKYFKSITSDLYEWQKENL 74


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 367 PSLSDLSDPEASLDIPSQVPPLTPGTNKKMAE 462
           PSLSD   P +S    SQ  P +PG+N   +E
Sbjct: 137 PSLSDNLFPGSSFSASSQQNPSSPGSNDIKSE 168


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 703 PKSMSPMNAGALA--TNSSRPIAQMSLPLSSRELLKATPSNENS 578
           P    P+N  +    T+S++ I   +LP SS+ +   TPS  N+
Sbjct: 394 PDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNN 437


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 664 TNSSRPIAQMSLPLSSRELLKATPSNENSRA 572
           T+SSRP    S PL  R   K  PS+ NS A
Sbjct: 591 THSSRPTPNASSPLDVRS--KQKPSSANSNA 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,520,948
Number of Sequences: 5004
Number of extensions: 68244
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)