Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0666
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0199 + 32310272-32311432 33 0.32
07_03_1386 - 26192019-26192073,26192272-26192397,26192570-261926... 30 2.9
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689... 29 3.9
03_01_0488 + 3706416-3707948 29 3.9
02_01_0251 - 1652356-1652522,1652564-1652608,1652658-1652733,165... 29 3.9
09_04_0725 + 19749227-19749361,19749705-19749772,19749869-197499... 28 9.0
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 28 9.0
08_01_0434 + 3809681-3810016,3810039-3811100 28 9.0
05_04_0199 + 18980017-18980759,18981478-18981532 28 9.0
04_03_0612 + 18023354-18023916,18024046-18024805 28 9.0
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 28 9.0
01_05_0659 - 24061318-24061575,24061664-24061918,24062001-240621... 28 9.0
>03_06_0199 + 32310272-32311432
Length = 386
Score = 33.1 bits (72), Expect = 0.32
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 421 PAMGCLEKPLGQKDRRARVLSALHGAPQLPG-AHTLCHRRCHHPR 290
PA G +P+ ++ R AR AL GA L G CHRR HPR
Sbjct: 87 PARGARPQPVHRR-REARRHDALRGAAALRGRVRCPCHRRFAHPR 130
>07_03_1386 -
26192019-26192073,26192272-26192397,26192570-26192622,
26192722-26192807,26192896-26193017,26193096-26193155,
26193787-26193866,26193949-26194087,26194273-26194367,
26194792-26194860,26195015-26195131,26195839-26195913,
26196590-26196961
Length = 482
Score = 29.9 bits (64), Expect = 2.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 329 GSHFMPSALPPPSSHKSSLRLN 264
GSHF P +PPP ++K+ +N
Sbjct: 153 GSHFEPKTIPPPLTNKADWEIN 174
>05_03_0328 -
12468142-12468262,12468443-12468641,12468758-12468974,
12469896-12469994,12470843-12470899,12470943-12472577
Length = 775
Score = 29.5 bits (63), Expect = 3.9
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 295 GGGNADGIKCEPQEAEEPRAMQKVPSLSDLS--DPEASLDIPSQVPPLTPGTNKKMAEAL 468
GGG G K P ++ PSL L+ D E L ++V TP + + AE +
Sbjct: 9 GGGGGGGDKAPPSASD--------PSLGFLTKRDTEVKLPRATRVKNKTPASVQITAEQI 60
Query: 469 KATFASWEKEQLRPACRKIQDSGAXSQ*R 555
++ ++RP +KI DS S+ R
Sbjct: 61 LREARERQEPEIRPPKQKITDSIELSEYR 89
>03_01_0488 + 3706416-3707948
Length = 510
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 226 SLVKGCLLESIVGLALRPLQ-LHSAGTLDFNYFIQISDMYGALGET 92
+L+ C + +A R +Q L S + Y+I +SDMY A G T
Sbjct: 433 ALLGACRTHGDINMAERAVQKLRSLNPEEGGYYILLSDMYAASGRT 478
>02_01_0251 -
1652356-1652522,1652564-1652608,1652658-1652733,
1652976-1653041,1653120-1653238,1653334-1653508,
1653604-1653881,1654253-1654436,1654455-1654550,
1654872-1655012,1655091-1655123
Length = 459
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 569 GGSRVLIRGCSLQQFARAQGQGHLCDGPRRVRRQSAGIHGRHTFGN 706
GG R RG ++A +G G +G +RV GI G H N
Sbjct: 414 GGGRGYARGGGDNEYAGNRGSGRPSNGYQRVPHHERGILGSHNARN 459
>09_04_0725 +
19749227-19749361,19749705-19749772,19749869-19749938,
19750244-19751482,19755359-19755423,19755502-19755655,
19755725-19755733
Length = 579
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 304 NADGIKCEPQEAEEPRAMQKVPSLSDLSDPEASLDIPSQVPPLT---PGTNKKMAEALKA 474
+ADGI E P + + D PE S P+ V +T G++ K++E K+
Sbjct: 129 SADGIGKNLGTQEHPIHLDSTAKVDDEISPETSYQAPNVVETVTDIGSGSSHKISENAKS 188
Query: 475 TF 480
+F
Sbjct: 189 SF 190
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 682 NAGALATNSSRPIA-QMSLPLSSRELLKATPSNENSRAAQRSHAVTGXS 539
NAGA ++ P+ S+P+ S+ + T +NEN + RS VTG S
Sbjct: 198 NAGAQQPLNAAPVVVPSSVPMPSK-VSSITTTNENEGVSIRSDEVTGKS 245
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 347 GSSASWGSHFMPSALPPPSSHKSSLRLN 264
G + W H +P PPP SHKS L ++
Sbjct: 263 GLNEDWRCHALPPP-PPPLSHKSDLHVH 289
>05_04_0199 + 18980017-18980759,18981478-18981532
Length = 265
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 344 SSASWGSHFMPSALPPPSSHKSSLRLNETCS 252
S ++ G H +PS PPP S SS T S
Sbjct: 37 SRSAGGGHHVPSVYPPPPSSSSSSACRHTPS 67
>04_03_0612 + 18023354-18023916,18024046-18024805
Length = 440
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 552 TAWLRWAAREFSLEGVAFNSSRELRGKDICAMGREE 659
T WL + + SLE + N+ +E+ D+C E+
Sbjct: 163 TEWLEYLGTDGSLEELVVNNCQEISQYDLCCQNLED 198
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 311 SALPPPSSHKSSLRLNETCSLEEAPRRSEPRKRLPPRVH 195
S PPP H ++ +++ P + R+R PPR H
Sbjct: 823 SCRPPPCHHHDRPWKSQEGAMQRPPVQETTRRRAPPRHH 861
>01_05_0659 - 24061318-24061575,24061664-24061918,24062001-24062172,
24062258-24062381,24062442-24062485,24063601-24063734,
24063822-24063905,24064100-24064390,24064713-24065045,
24065145-24065389,24065644-24065910,24065997-24066157,
24066253-24066569,24066665-24066946,24067024-24067325,
24067398-24067488,24067796-24067849,24067963-24068039,
24068159-24068318,24068653-24068737,24069029-24069238,
24069344-24069732
Length = 1444
Score = 28.3 bits (60), Expect = 9.0
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -2
Query: 578 SSRPTQPRRYWLFAPLSWIFRHAGRSCSFSQEAKVAFSASAIFLLVPGVSGGTCDGM 408
+S+PTQ FAPLS F + S QE K L+ GVSG G+
Sbjct: 850 NSQPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGV 906
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,325,269
Number of Sequences: 37544
Number of extensions: 586778
Number of successful extensions: 2279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2278
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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