Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0666
(915 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4156| Best HMM Match : Ets (HMM E-Value=0) 60 2e-09
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 4e-07
SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13) 51 2e-06
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19) 29 4.0
SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1) 29 5.2
SB_38452| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079) 28 9.2
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 28 9.2
SB_35182| Best HMM Match : CUB (HMM E-Value=0) 28 9.2
>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
Length = 516
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +3
Query: 513 VPKDPRQWSEXPVTAWLRWAAREFSLEGVAFNSSRELRGKDICAMGREEFVARAPAFMGD 692
VP DP W++ V W+ WA +EFSL+ + + + G+D+C + R++F+ APA+ GD
Sbjct: 161 VPADPLCWTKEHVRQWILWAIKEFSLKDIDIDRF-NIDGRDLCRLTRDDFMKLAPAYNGD 219
Query: 693 ILL 701
IL+
Sbjct: 220 ILM 222
>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 52.8 bits (121), Expect = 4e-07
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +3
Query: 507 PGVPKDPRQWSEXPVTAWLRWAAREFSLEGVAFNSSRELRGKDICAMGREEFVARAP 677
P VP DPR WS+ V WL+WA ++++ VA + + GK IC + E FV R P
Sbjct: 116 PRVPPDPRLWSKWDVLEWLKWATERYNVKDVAADKFL-MNGKGICMLPPEGFVYRVP 171
>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
Length = 233
Score = 50.8 bits (116), Expect = 2e-06
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +3
Query: 522 DPRQWSEXPVTAWLRWAAREFSLEGVAFNSSRELRGKDICAMGREEFVARAP 677
DPR W+ VT+WLRW + +SLE V + E+ GK +C M + F+ R P
Sbjct: 163 DPRLWTREDVTSWLRWISEAYSLENVKLDRF-EMNGKALCLMTLDMFLYRVP 213
>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 715 SLDVPKSMSPMNAGALATNSSRPIAQMSLPLSSRELLKATPSNENSRAAQRSHA 554
S D P S S ++ + +N S P Q S + ++TPS ++S + Q H+
Sbjct: 480 SSDTPSSQSALSNQTMHSNRSTPSHQKSPSNQTMHSNRSTPSKQSSPSNQTMHS 533
>SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)
Length = 341
Score = 29.5 bits (63), Expect = 4.0
Identities = 21/77 (27%), Positives = 31/77 (40%)
Frame = +2
Query: 5 GLYCCQLLYRAASHHSVMLASSV*SRFDNRFTECPVHIANLDKIIKIESPSTMKLEWTES 184
GL L+ HH V LA + SRF T + + L++ I I KL T+
Sbjct: 85 GLLAIPLIVTCNIHHKVCLAMDITSRFIAYSTVLHLLVVTLERYIMIVHAMKYKLWITKK 144
Query: 185 ESDYGLEEAAFYEAPTA 235
+ L + A T+
Sbjct: 145 RTSIVLTSVWVFSAATS 161
>SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 29.5 bits (63), Expect = 4.0
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 344 SSASWGSHFMPSALPPPSSHK-SSLRLNETCSLEEAPRRS-EPRKRLPPRVH 195
S AS G FMP PPPS+ SSL + E ++E R+ E R + VH
Sbjct: 78 SPASPGLPFMPPPPPPPSTEDLSSLGVEELAAVEGRERQQVESRIAMLRNVH 129
>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
Length = 535
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 329 GSHFMPSA-LPPPSSHKSSLRLNETCSLEEAPRRSEPRKRL 210
G F+P+A L + + L +NE +L PR SEPR+ L
Sbjct: 329 GEQFVPTAELGSSPNKRRRLTVNELQNLHYLPRTSEPREML 369
>SB_38452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 250 KEHVSFSLRLDLCDEGGGNADGIKCEPQEAEEPR-AMQKVPS 372
K+ + SL L +GGG +G++ EAE PR +++ +PS
Sbjct: 84 KQRLDLSLDLQPLVKGGGFVNGLRQSLAEAESPRLSVRSLPS 125
>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
Length = 502
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 314 PSALPPPSSHKSSLRLNETCSLEEAPRRSEPRKRLPP 204
P PP S K SL + SL+E+ +R LPP
Sbjct: 297 PPTPPPKPSRKHSLGTRKPISLQESKQRRNTDPSLPP 333
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 328 PQEAEEPRAMQKVPSLSDLSDPEASLDIPSQVPPLTPGTNKK 453
P+E ++P +K+ S+ + P A + + PP P K+
Sbjct: 275 PEETDKPEKPEKMEEKSEKAVPPAPKQVEQRAPPPQPSEEKQ 316
>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
Length = 963
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 516 PKDPRQWSEXPVTAWLRWAAREFSLEGVAFNSSREL 623
P++PRQW+ VT+W + AR G+ N R L
Sbjct: 419 PENPRQWTLVGVTSWGKGCARALKY-GIYANVRRYL 453
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,645,413
Number of Sequences: 59808
Number of extensions: 604937
Number of successful extensions: 1866
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1862
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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