Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0666
         (915 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    31   0.019
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             31   0.019
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.31 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.96 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.96 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.7  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   2.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 30.7 bits (66), Expect = 0.019
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 140 KIESPSTMKLEWTESESDYGLEEAAFYEAPTAVAPPPRSMSRSVLD*TCVTRVVATP 310
           K++SPS   +E    + D     +A   APT+V   PRS  + V D   + RV+  P
Sbjct: 573 KLDSPSDSGIESGTEKPDKPASSSAS-SAPTSVCSSPRSEDKEVEDMPVLKRVLQAP 628


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 30.7 bits (66), Expect = 0.019
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 376 SDLSDPEASLDIPSQVPPLTPGTNKKMAEALKATFA 483
           SD +   A L IPS  P  TPG + K  E   A FA
Sbjct: 873 SDSAQGRAILKIPSYKPASTPGCSSKNGEPTSAAFA 908


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +1

Query: 334 EAEEPRAMQKVPSLSDLSDPEASLDIPSQVPPLTPGTNKKMAEALK 471
           ++ +P AM++V  L+ L   + ++   SQ+PP      +++AEA++
Sbjct: 711 QSHQPGAMEQVSYLTSLERTQPTM---SQMPPTAQPRMERLAEAVR 753



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 108 PYISLIWIK*LKSRVPAL*SWSGRRASPTMDSRRQPFTRLRPPWRL 245
           PY  L+W   + S   A+  W+ R+  P ++   + +  L P W L
Sbjct: 467 PYDHLVWNSWMPSIRGAIQQWTCRQPEPLIE-LIEHWMPLLPNWIL 511


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 367 PSLSDLSDPEASLDIPSQV 423
           P+LS LSDPE  +D  +Q+
Sbjct: 269 PNLSKLSDPEVWIDAVTQI 287


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 367 PSLSDLSDPEASLDIPSQV 423
           P+LS LSDPE  +D  +Q+
Sbjct: 322 PNLSKLSDPEVWIDAVTQI 340


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +2

Query: 128 DKIIKIESPSTMKLEWTESESDYGLEEAAFYEAPTAVAPPPRSMSRSV 271
           D ++++ S       WT    +  +E     EA  A+ PP R   +++
Sbjct: 142 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKAL 189


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +2

Query: 128 DKIIKIESPSTMKLEWTESESDYGLEEAAFYEAPTAVAPPPRSMSRSV 271
           D ++++ S       WT    +  +E     EA  A+ PP R   +++
Sbjct: 199 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKAL 246


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/47 (23%), Positives = 20/47 (42%)
 Frame = +2

Query: 128 DKIIKIESPSTMKLEWTESESDYGLEEAAFYEAPTAVAPPPRSMSRS 268
           D ++++ S       WT    +  +E     EA  A+ PP R   ++
Sbjct: 126 DNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDKA 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,479
Number of Sequences: 438
Number of extensions: 4851
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)