Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0666
         (915 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    31   0.81 
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    30   1.9  
At4g24590.1 68417.m03523 expressed protein                             30   2.5  
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    29   4.3  
At1g31790.1 68414.m03902 pentatricopeptide (PPR) repeat-containi...    29   5.7  
At1g05940.1 68414.m00623 amino acid permease family protein low ...    29   5.7  
At4g08098.1 68417.m01317 hypothetical protein                          28   7.5  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    28   9.9  
At3g43920.1 68416.m04701 ribonuclease III family protein similar...    28   9.9  
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea...    28   9.9  
At1g18680.1 68414.m02331 HNH endonuclease domain-containing prot...    28   9.9  

>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 316 IKCEPQEAEEPRAMQKVPSLSDLS-DPEASLDIPSQVPPLTP 438
           +KCEP   + P    K+  L+DL+ +P  + D+ S +P  TP
Sbjct: 9   VKCEPMTVDSPSRPLKLVVLADLNFNPPETDDLDSSIPIPTP 50


>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
           protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -2

Query: 347 GSSASWGSHFMPSALPPPSSHKSSLRLNETCSLEEAPRRSEPRK 216
           GS +  GS ++PS LPPP + K   +  E    EE PR  E  K
Sbjct: 77  GSVSKKGSRYVPSFLPPPLASKG--KEPEKKREEERPREREKGK 118


>At4g24590.1 68417.m03523 expressed protein 
          Length = 241

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 289 DEGGGNADGIKCEPQEAEEPRAMQKVPSLSDLSDPEA 399
           DE GG        P+E EE  + ++ PS SD  DPEA
Sbjct: 50  DENGGEQSE---SPEEEEEEESDREEPSASDPGDPEA 83


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -2

Query: 680 CRRSGDELFAAHRTDVLAPELARTVE 603
           C+++ DE+ +A+R DVL P++ ++ E
Sbjct: 261 CKKTNDEVRSANRVDVLIPDIIQSSE 286


>At1g31790.1 68414.m03902 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 409

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 622 SGARTSVRWAAKSSSPERRHSWETYFWEHLEILQKXVEKEXSLLANVRPTCN 777
           S A T V WAAK ++  R   ++    + +E+    ++K  S+ +NV   C+
Sbjct: 257 SNANT-VAWAAKVTNDYREGEFQEVIRDFIEMGNHGIKKNVSVFSNVLKACS 307


>At1g05940.1 68414.m00623 amino acid permease family protein low
           similarity to SP|P30823 High-affinity cationic amino
           acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
           Pfam profile PF00324: Amino acid permease
          Length = 569

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -2

Query: 362 FCIARGSSASWGSHFMPSA-----LPPPSS 288
           F   R SSA+W SHF  SA     LPPPSS
Sbjct: 7   FSNQRLSSATWFSHFRASALRSKSLPPPSS 36


>At4g08098.1 68417.m01317 hypothetical protein
          Length = 176

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +1

Query: 601 PSTVRASSGARTSVRWAAKSSSPERRHSWETYFWEHLEILQKXVEKEXSLLANVRPTCNE 780
           P  +++SSG  ++      S S +     ++  W+H++   K  +K  +  +N  P   E
Sbjct: 105 PPQLKSSSGPASASGEVIPSESEDDDEGEDSNTWKHVKTKPKLDDKNETSTSNAEPAMKE 164

Query: 781 S 783
           S
Sbjct: 165 S 165


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 316 IKCEPQEAEEPRAMQKVPSLSDLSDPEASLDIP 414
           +KC     E  R  +K+P    + DP+  L IP
Sbjct: 44  VKCSASGTERVRESKKLPPKDPIEDPKPQLPIP 76


>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
            RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
            GI:6102610; contains Pfam profiles PF02170: PAZ domain,
            PF00636: RNase3 domain
          Length = 1531

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/88 (25%), Positives = 37/88 (42%)
 Frame = +3

Query: 441  HQQEDGRGAEGHLRLLGEGAAAPGVPKDPRQWSEXPVTAWLRWAAREFSLEGVAFNSSRE 620
            H+    R  +G++R    GA  P     P Q+S  PV        RE  L+   F  +  
Sbjct: 1017 HRLTTSRKLQGYIR---NGAFEPRRWTAPGQFSLFPVPCKCGIDTREVPLDPKFFTENMT 1073

Query: 621  LRGKDICAMGREEFVARAPAFMGDILLG 704
            ++    C MG    V+++ +   + L+G
Sbjct: 1074 IKIGKSCDMGHRWVVSKSVSDCAEALIG 1101


>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400); BING4
           (gi:3811380) {Mus musculus]; similar to hypothetical
           protein GB:P40055 [Saccharomyces cerevisiae]
          Length = 536

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 295 GGGNADGIKCEPQEAEEPRAMQKVPSLSDLSDPEASLDIPSQVPPLTPGTNKK 453
           G  N D     P E  + R  ++V SL D   PE  +  PS++  + P   K+
Sbjct: 400 GEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLDPSKIGAMRPSRRKE 452


>At1g18680.1 68414.m02331 HNH endonuclease domain-containing protein
           contains Pfam domain PF01844: HNH endonuclease
          Length = 186

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 341 SASWGSHFMPSALPPPSSHKSSLRLNETCSLEEAPR 234
           SAS+ +    +A+PPPS   S  R N   + EE PR
Sbjct: 6   SASFTNSTTAAAVPPPSPPSSPSRSNVKSNGEERPR 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,477,412
Number of Sequences: 28952
Number of extensions: 399364
Number of successful extensions: 1317
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)