Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0665
         (848 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.25 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 78   TAIPPPSKVAPQCGKPANAAPTKRYL 155
            T IPPP+ V P+  KP+      +Y+
Sbjct: 1084 TTIPPPAVVMPEVDKPSQPCEPGQYV 1109


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 528 VQIMTRRVGYMSQWVESSSRICFVAGL*RGNSRVRNRQYF 409
           V ++   VG+   +V  +S + F+  L +     + R YF
Sbjct: 15  VSVILISVGWWENFVSETSYLPFIRALGKSKKEFKTRTYF 54


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 90  PPSKVAPQCGKPANAAPTKRYLLSIGRIFH 179
           P + +A QC K +N +P      ++G+ FH
Sbjct: 36  PLAMLAAQCNKLSNKSPPPLADAAVGKGFH 65


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 528 VQIMTRRVGYMSQWVESSSRICFVAGL*RGNSRVRNRQYF 409
           V ++   VG+   +V  +S + F+  L +     + R YF
Sbjct: 248 VSVILISVGWWENFVSETSYLPFIRALGKSKKEFKTRTYF 287


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 528 VQIMTRRVGYMSQWVESSSRICFVAGL*RGNSRVRNRQYF 409
           V ++   VG+   +V  +S + F+  L +     + R YF
Sbjct: 248 VSVILISVGWWENFVSETSYLPFIRALGKSKKEFKTRTYF 287


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 91  HHPKWPHSAGNQPTQHP 141
           HH +W +S  N   Q+P
Sbjct: 72  HHGQWNYSPDNHFEQYP 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,744
Number of Sequences: 336
Number of extensions: 4423
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)