Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0665
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    46   7e-06
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    29   0.63 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.83 
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.4  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 24/68 (35%), Positives = 35/68 (51%)
 Frame = +2

Query: 257  YRYRFHAPXHDTYEVSWVSFTTEKLETYYWNYMDHYICTRGDSDFALVEPLKYWRFRTLL 436
            Y Y F +     Y  S ++F+      Y WNY+D  IC  G   + L + +KYWR R +L
Sbjct: 943  YDYNFWSKNECKYVKSNITFSANDSANYNWNYVDQLIC--GFETY-LPDSVKYWRARFVL 999

Query: 437  LPLYNPAT 460
            LP+   +T
Sbjct: 1000 LPMSTTST 1007


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -1

Query: 269 NDNGXYIEWRIWMSGSVSSDGDGRPDQRKFVEDPPNREQITLGGCCVGWFPALWGH 102
           ++N   I+ + W         +     R F E  P  EQ T GG C+   P +  H
Sbjct: 139 SNNKTTIDLKYWYCSCSQFSYNAFNSSRSFDEPMPKNEQETWGGRCLSHHPTICSH 194


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 75   STAIPPPSKVAPQCGKPANAAPTKRYLLSIGRIFHKLTLVGSTITVTRYRPRHPYP 242
            ST  PPP   +     PA A+P       +G  +H  T  G+ +   + +P HP P
Sbjct: 905  STLPPPPPTASMTASAPAIASPPPP---KVGETYHPPTASGTRVPPVQ-QPSHPNP 956


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 427 DSTIASLQSGNETNSRRRLNPLRHISNSTRHDLDQLTDNFLKMTE 561
           +S IA LQ      SR++ NP + +       L  L +NF  + E
Sbjct: 396 ESLIALLQDSPAGYSRKKFNPSKEVGQEENIWLSDLENNFACLLE 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,300
Number of Sequences: 5004
Number of extensions: 72738
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)