Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0665
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084...    30   2.7  
11_01_0248 - 1910312-1910730,1910805-1911336                           29   6.2  
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411...    29   6.2  

>04_04_0209 +
           23607749-23607893,23607990-23608043,23608156-23608433,
           23609524-23609894,23610033-23610096,23610472-23610603
          Length = 347

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 296 RTCRGSVRGNDNGXYIEWRIWMSGSVSSDGDGRPDQRKFVEDPPNREQI 150
           RT  G + G   G +I  R+   G++++ G G+P  R+F+    N+E +
Sbjct: 79  RTALGELSGG-GGFFIR-RVASPGALAARGPGKPLARRFIRPSNNKENV 125


>11_01_0248 - 1910312-1910730,1910805-1911336
          Length = 316

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 479 RLREFVSLPDCREAIVESGTASISEAQLVRNHCRRAYKCNDPCSSSSKF 333
           R+ +  SLP+ R  +    + S+ ++ +  + C+  Y C DP  +SS+F
Sbjct: 125 RIPDLSSLPEPRLLMTHIPSQSLPDS-VAASGCKVVYLCRDPWIASSRF 172


>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
            4110567-4110621,4111046-4111143,4112259-4112417,
            4112518-4112577,4113436-4113624,4113749-4113802,
            4113959-4114045,4114149-4114881,4115282-4115373,
            4115739-4115812,4116097-4116199,4116342-4117204,
            4117649-4117724,4117861-4117972,4118092-4118168,
            4118272-4118352,4118710-4118789,4118860-4118875
          Length = 1059

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = +2

Query: 272  HAPXHDTYEVSWVSFTTEKLETYYWNYMDHYICTRGDSDFALVEPLKYWRFRTLLLPLYN 451
            H   H   + S+ S  T   + ++    D  +C       A ++PL   RF ++L+P++ 
Sbjct: 843  HQEEHGISDSSYASLATSAADAFHVMMSDSEVCLN-KKFHARIKPLYKQRFFSILMPIFL 901

Query: 452  PATKQ 466
               K+
Sbjct: 902  SKIKE 906


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,990,243
Number of Sequences: 37544
Number of extensions: 525119
Number of successful extensions: 1746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1744
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)