Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0665
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 42   8e-04
SB_38971| Best HMM Match : SRCR (HMM E-Value=0)                        31   0.89 
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   31   1.6  
SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)                   29   3.6  
SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               29   4.8  
SB_57012| Best HMM Match : IncA (HMM E-Value=0.17)                     29   6.3  
SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)               29   6.3  
SB_52058| Best HMM Match : Pneumovirus_M2 (HMM E-Value=9.4)            29   6.3  
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)               28   8.3  

>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = +3

Query: 141 TKRYLLSIGRIFHKLTLV--GSTITVTRYRPRHP 236
           T  Y LS+GR  H+L+++   S I VTRYRPRHP
Sbjct: 724 TDEYFLSLGRNLHRLSVIPNRSQINVTRYRPRHP 757



 Score = 35.5 bits (78), Expect = 0.055
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 257 YRYRFHAPXHDTYEVSWVSFTTEKLETYYWNYMDHYICTRGDSDFA 394
           YRYR        Y+     F  ++L+ Y WNY+D +I   GD +F+
Sbjct: 765 YRYRLWTGKGVDYQPHQAEFQHDELDKYNWNYLDQHII--GDQEFS 808


>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2436

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 94   HPKWPHSAGNQPTQHPPSVICSRLGGSSTNLRWSGLPSPSL 216
            HP   ++A + PT  PP+V       SS +LRW  +P  S+
Sbjct: 1435 HPIVRYTAEDVPTTAPPNVRILNKTSSSIDLRWDAIPIKSV 1475



 Score = 31.5 bits (68), Expect = 0.89
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 94   HPKWPHSAGNQPTQHPPSVICSRLGGSSTNLRWSGLPSPSL 216
            HP   ++A + PT  PP+V       SS +LRW  +P  S+
Sbjct: 1703 HPIVRYTAEDVPTTAPPNVRILNKTSSSIDLRWDAIPIKSV 1743


>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +1

Query: 439 ASLQSGNETNSRRRLNPLRHISNSTRHDLDQLTDN-----FLKMTELYFNKVKRPNKQRA 603
           +S+ +      R+    +  +SNS  H  ++L+       F    ELY +KVKR ++   
Sbjct: 541 SSMSTSTSPMMRKSCYAILDMSNSPHHSHEKLSRTPTYGVFKTYEELYLSKVKREDRLEQ 600

Query: 604 GVSSSPFQRARW 639
           G+ S   ++ R+
Sbjct: 601 GIQSENMRKLRF 612


>SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)
          Length = 227

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
 Frame = -1

Query: 560 SVILRKLSVSWSKS*RVEL--DICRSGLSRLREFVSLPDCREAI------VESGTASISE 405
           SV+LR+L  S++ S       + CR+ L+ L +  +LP  R A+      +   T+ +++
Sbjct: 126 SVLLRQLFESYNSSVSTTNPEEFCRTVLAWLDQHCTLPSLRPAVLAALRDISRTTSILTD 185

Query: 404 AQLVRNHCRRAYKCNDPCSSS 342
             LV    R+A   +DP + S
Sbjct: 186 PSLVPGEARQAASGSDPTNLS 206


>SB_58733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2060

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = -1

Query: 509  ELDICRSGLSRLREFVSLPDCREAIVESGTASISEAQLVRNHCRRAYKCNDPCSSSSKFP 330
            ELD      +R RE V          E    SI  A  +R   RRAYKC  PC  ++  P
Sbjct: 858  ELDSSLQPCARRREHVFKRKDETCPDEIADGSIGRAGSLRR--RRAYKCKIPCVFTNSLP 915


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 251 YXYRYRFHAPXHDTYEVSWVSFTTEKLET 337
           Y Y +RF+ P   T  +SWVSF    L T
Sbjct: 59  YYYLFRFYIPASLTVVMSWVSFWISPLAT 87


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = +1

Query: 574  KVKRPNKQRAGVSSSPFQRARWQ----HPATDRPRFRM-XAMATXSS 699
            K  RP K++   ++ P ++  +Q    HPA+DRP+ R+   M T SS
Sbjct: 971  KETRPRKEKQRKTARPSEQPEYQGVSRHPASDRPQPRLPVVMETLSS 1017


>SB_57012| Best HMM Match : IncA (HMM E-Value=0.17)
          Length = 537

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 593 LFGLLTLLKYNSVILRKLSVSWSKS*RVELDICRSGLSRLREFVSLPD 450
           +FG+ T+L Y +++L+K    ++      LDI R   S L  +V L +
Sbjct: 344 IFGVETILVYTALLLKKRVAVYTPRLPTLLDITRQNWSILHPYVDLKE 391


>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 278 PXHDTYEVSWVSFTTEKLETYYWNYMDHYI 367
           P  D +     +F + KL  YYW Y+ H I
Sbjct: 260 PMEDVFRRPNFNFESSKLMYYYWTYISHRI 289


>SB_52058| Best HMM Match : Pneumovirus_M2 (HMM E-Value=9.4)
          Length = 199

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 593 LFGLLTLLKYNSVILRKLSVSWSKS*RVELDICRSGLSRLREFVSLPD 450
           +FG+ T+L Y +++L+K    ++      LDI R   S L  +V L +
Sbjct: 5   IFGVETILVYTALLLKKRVAVYTPRLPTLLDITRQNWSILHPYVDLKE 52


>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
          Length = 592

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 101 SGPTVRETSQRSTHQALSALDWEDLPQTYAGRVYHHR 211
           + P V  T+ R+ H+ LSA  + D+P+++   VY HR
Sbjct: 411 TSPRVTSTTFRTRHRTLSARFFSDVPESH---VYVHR 444


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,990,365
Number of Sequences: 59808
Number of extensions: 585491
Number of successful extensions: 1786
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1786
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)