Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0665
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    27   0.29 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.7  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 36  GVNENEVIESHCASTAIPPPSKVAPQCGKPANAAPTKRYLLSIGRIFHKLTLVGSTITVT 215
           G+N+ + +  HC+   +P P ++  +    + A P    LLS G +   +  V +TI  T
Sbjct: 32  GMNQCQAVNGHCSHLCLPAP-RINSKSPLLSCACPDGLKLLSDGLMC--VEKVSTTIVPT 88

Query: 216 RYRPRHPYPP---FNIXTVIV 269
                 P+     FNI T  +
Sbjct: 89  TQEINKPFKRLELFNITTTTI 109


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 36  GVNENEVIESHCASTAIPPPSKVAPQCGKPANAAPTKRYLLSIG 167
           G+N+ + +  HC+   +P P ++  +    + A P    LLS G
Sbjct: 32  GMNQCQAVNGHCSHLCLPAP-RINSKSPLLSCACPDGLKLLSDG 74


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +1

Query: 109  HSAGNQPTQHPPSVICSRLGGSSTNLRWSGLP 204
            H+A   P Q P    C+ L   +  + W   P
Sbjct: 1075 HTAEGVPEQPPHDTTCTTLTSQTIRISWMSPP 1106


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 323 EKLETYYWNYMDHYICTRG 379
           EKL T YW  ++  +C  G
Sbjct: 372 EKLSTIYWFTVEFGLCKEG 390


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 33  VGVNENEVIESHCASTAIPPPSKV 104
           V V  N+ +  HC +  +P P+ V
Sbjct: 719 VSVERNKHVALHCQAQGVPTPTIV 742


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 33  VGVNENEVIESHCASTAIPPPSKV 104
           V V  N+ +  HC +  +P P+ V
Sbjct: 715 VSVERNKHVALHCQAQGVPTPTIV 738


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,809
Number of Sequences: 438
Number of extensions: 5217
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)