Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0664
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.86 
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    26   3.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   6.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   6.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.0  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 272 TGLHRPWCL 298
           TGLHRPWCL
Sbjct: 684 TGLHRPWCL 692


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 184 PGIWSRSLIRSSHQRXPNAAAAGQQPSV--ADRAPSTLVPGVST 309
           PG WS+ L R   +    + AA ++P +   D  P   + GV T
Sbjct: 52  PGSWSQVLSRELLKNIDTSIAADEKPMIVAVDLQPMAPIDGVCT 95


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 146 RLSRGGVRAEHGHRGSGVDH*SDLHI 223
           R  RG + +EHG R S +D   D HI
Sbjct: 144 RDGRGELGSEHGERRSAMDGLRDRHI 169


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 232 PNAAAAGQQPSVADRAPSTLVPGVSTNEDLSCQTS 336
           P A+ A  +P VA ++P  L+P +   +  + QTS
Sbjct: 433 PLASNAENKPPVAQQSPPVLLPTLPPIQTTTIQTS 467


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 232  PNAAAAGQQPSVADRAPSTLVPGVSTNEDL 321
            PN       PSVA + PS++ P  + +  L
Sbjct: 1490 PNVPVPSMIPSVAQQPPSSVAPATAPSSTL 1519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,419
Number of Sequences: 5004
Number of extensions: 20469
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)