Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0664
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0819 - 28312667-28313219,28315157-28316430                       28   4.6  
02_05_1190 + 34852467-34852745,34852871-34852989,34853795-34854290     27   8.0  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   8.0  

>04_04_0819 - 28312667-28313219,28315157-28316430
          Length = 608

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 116 ISKDVQASTHRLSRGGVRAEHGHRGSGVDH*SDLHISEXP 235
           + K+  +S+ RL    +   HGH G G  H    H+S  P
Sbjct: 3   LHKEASSSSSRLDAAPLLPHHGHGGGGAGH----HLSSQP 38


>02_05_1190 + 34852467-34852745,34852871-34852989,34853795-34854290
          Length = 297

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 318 VLVXXDARHQGRWSPVSDTRLLTGCSCV 235
           V++  D  H  RW P++D+R   G   +
Sbjct: 114 VIIWGDTPHYWRWIPLTDSRFAEGAELI 141


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +1

Query: 214 SSHQRXPNAAAAGQQPS-----VADRAPSTLVPGVSTNEDLSCQTSDGQEXE 354
           SS +  P AAAA ++P+      A  APS   P   ++ D S  +S G+E +
Sbjct: 15  SSRKPVPVAAAAARRPAPSPAAAAAPAPSPSNPSAVSDSDPSSYSSSGEETD 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,807,919
Number of Sequences: 37544
Number of extensions: 174414
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)