Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0664
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81470-1|CAB03881.1|  321|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 211 RSSHQRXPNAAAAGQQPSVADRAPSTLVPGVSTNEDLSCQTSDGQE 348
           +S+ +R  ++     +PS +  APS  VPG S   D + +  +  E
Sbjct: 104 KSASKRKSSSLMNKDEPSTSTEAPSADVPGTSEASDEASEIQEAPE 149


>Z81470-1|CAB03881.1|  321|Caenorhabditis elegans Hypothetical
           protein C14A6.1 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 135 LLLIGFLAAACAQNMDTGDL 194
           LLL G L AA AQN +TG +
Sbjct: 6   LLLFGLLGAATAQNCNTGGI 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,550,548
Number of Sequences: 27780
Number of extensions: 130488
Number of successful extensions: 272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)