BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0664 (487 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa... 30 0.72 At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar... 28 2.9 At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 28 2.9 At5g19340.1 68418.m02305 expressed protein 27 6.7 At3g25750.1 68416.m03206 F-box family protein contains F-box dom... 27 8.9 >At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase family protein similar to inositol polyphosphate 5-phosphatase I (GI:10444261) and II (GI:10444263) [Arabidopsis thaliana]; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family Length = 529 Score = 30.3 bits (65), Expect = 0.72 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = -1 Query: 208 LMIDSRSPVSMFCA--HAAARKPMSRSLYIFGYYSQNITLTISNSQCSS*SNR 56 L+++ P + + A A KP S+Y YS + T T S+S C S +R Sbjct: 122 LVVEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSSCGSEESR 174 >At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar to diacylglycerol kinase, theta (diglyceride kinase, DGK- theta, DAG kinase theta). [Homo sapiens] SWISS-PROT:P52824 Length = 712 Score = 28.3 bits (60), Expect = 2.9 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +1 Query: 190 IWSRSLIRSSHQRXPNAAAAGQQPSVADRAPSTLVPGVSTNEDLS 324 +W R + SH + + GQQPS +LVPG + + S Sbjct: 62 VWKRLRVPLSHHQWTDDYGYGQQPSTCCVCLYSLVPGQNVSNKAS 106 >At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo sapiens}; similar to WD repeat protein Srw1 -Schizosaccharomyces pombe,PID:d1023012 Length = 475 Score = 28.3 bits (60), Expect = 2.9 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -1 Query: 280 EPCQRH*AADRLQLRWGFADVKI*LMID-SRSPVSMFCAHAAARKPMSRSLYIFG 119 E C ++D +L G D K+ + S PV FC HAAA K ++ S + FG Sbjct: 294 EICGLKWSSDNRELASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSPHHFG 348 >At5g19340.1 68418.m02305 expressed protein Length = 263 Score = 27.1 bits (57), Expect = 6.7 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 247 AGQQPSVADRAPSTLVPGVSTNEDLSCQTSDG 342 + + ++A+ PST P +S + DLS SDG Sbjct: 3 SAETATMAEAEPSTTGPRISFSADLSSSDSDG 34 >At3g25750.1 68416.m03206 F-box family protein contains F-box domain Pfam:PF00646 Length = 348 Score = 26.6 bits (56), Expect = 8.9 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = -2 Query: 156 RESR*VEACTSLDIIRRTSH*QYLTRNALREVTGFKIFLVRDKVSQ 19 +++R VE C L I+ S +TRN ++ GFK++ + + +++ Sbjct: 227 QDTRLVEYCGDLCIVHELS----ITRNHIQRTVGFKVYKMDEDLAK 268 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,111,048 Number of Sequences: 28952 Number of extensions: 121518 Number of successful extensions: 273 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 272 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 273 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 838967680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -