Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0664
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa...    30   0.72 
At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar...    28   2.9  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    28   2.9  
At5g19340.1 68418.m02305 expressed protein                             27   6.7  
At3g25750.1 68416.m03206 F-box family protein contains F-box dom...    27   8.9  

>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana];  contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 529

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 208 LMIDSRSPVSMFCA--HAAARKPMSRSLYIFGYYSQNITLTISNSQCSS*SNR 56
           L+++   P + + A    A  KP   S+Y    YS + T T S+S C S  +R
Sbjct: 122 LVVEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSSCGSEESR 174


>At5g63770.1 68418.m08004 diacylglycerol kinase, putative similar to
           diacylglycerol kinase, theta (diglyceride kinase, DGK-
           theta, DAG kinase theta). [Homo sapiens]
           SWISS-PROT:P52824
          Length = 712

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 190 IWSRSLIRSSHQRXPNAAAAGQQPSVADRAPSTLVPGVSTNEDLS 324
           +W R  +  SH +  +    GQQPS       +LVPG + +   S
Sbjct: 62  VWKRLRVPLSHHQWTDDYGYGQQPSTCCVCLYSLVPGQNVSNKAS 106


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 280 EPCQRH*AADRLQLRWGFADVKI*LMID-SRSPVSMFCAHAAARKPMSRSLYIFG 119
           E C    ++D  +L  G  D K+ +    S  PV  FC HAAA K ++ S + FG
Sbjct: 294 EICGLKWSSDNRELASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSPHHFG 348


>At5g19340.1 68418.m02305 expressed protein
          Length = 263

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 247 AGQQPSVADRAPSTLVPGVSTNEDLSCQTSDG 342
           + +  ++A+  PST  P +S + DLS   SDG
Sbjct: 3   SAETATMAEAEPSTTGPRISFSADLSSSDSDG 34


>At3g25750.1 68416.m03206 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 348

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 156 RESR*VEACTSLDIIRRTSH*QYLTRNALREVTGFKIFLVRDKVSQ 19
           +++R VE C  L I+   S    +TRN ++   GFK++ + + +++
Sbjct: 227 QDTRLVEYCGDLCIVHELS----ITRNHIQRTVGFKVYKMDEDLAK 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,111,048
Number of Sequences: 28952
Number of extensions: 121518
Number of successful extensions: 273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)