Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0663
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.39 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 324 KSLILFPERFKCASFLQPLRKVSHL 250
           ++ I+FP  F CA  L PL+   +L
Sbjct: 303 RAFIIFPTHFYCAFSLYPLKSTFYL 327


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 81  VKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLE 230
           ++ LNLD    + +  +T   T L+ LSL    +TTL     L    +LE
Sbjct: 492 LRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTLSNTSLLGAANQLE 541



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 278 KKLAHLNLSGNKI 316
           K L  LNL GNKI
Sbjct: 140 KSLKRLNLKGNKI 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,326
Number of Sequences: 336
Number of extensions: 2464
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)