Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0663
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    30   0.43 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    28   1.8  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    27   3.1  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   4.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.4  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   9.4  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   9.4  

>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 21  KRIL*QQNHSTSYVYYIPHEVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGL 182
           +R + ++    S +YY+  +V   +L N  S   V L+  YT L   ++  VG+
Sbjct: 619 QRTMPEEGTLASVMYYVAEQVAFFSLGNSNSLATVDLSQAYTGLDSYNIFAVGI 672


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 458 FDKYDQXADDSDIEEEDK*MXTMIVM 535
           FD  D  +DD DIEE ++ M T +V+
Sbjct: 693 FDSEDDNSDDMDIEESEEEMDTNMVI 718


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -2

Query: 181 RPTLLRLSICKFVYSSVKPTMFVLLQLSRFSSF---TSWGI**TYE-VLWFCCY 32
           RP + RL   KF YSS++ T+F L+  S F  F     W I   Y  VL F C+
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALV-ASFFRIFDVPVFWPILVVYYLVLSFFCF 159


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 96  LDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISN 254
           LD CR+ +   ++  Y +LQIL+   VG   +    T P       +D  I++
Sbjct: 518 LDPCRAMDPKVVSTSYVSLQILNKPYVGFRNINANYTFPTTSYSRRNDEEITS 570


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 193 LSVVRPTLLRLSICKFVYSSVKPTMFVL 110
           +S V P        KFV SS+KPT+ VL
Sbjct: 642 ISAVPPAEYASRFYKFVESSIKPTLLVL 669


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 293 LNLSGNKIKDLETLKPLE 346
           L+LS N I D+E+LKPL+
Sbjct: 896 LDLSHNYISDIESLKPLQ 913


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 178 VSQHSKVFRRCLCSENWNCQTIEYQMTDFSQWLQKAC 288
           + QH       L + NW+CQ I+ +  D      K C
Sbjct: 458 LQQHKNTIENQLAAANWDCQKID-EFMDAELKFYKEC 493


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 301 KIQMCKLFAATEKSQSFDILLSDSSNFLSIGSVGKPLSVVRP 176
           K  +  L AAT  ++   ILLS S+   +  S+  P+ ++ P
Sbjct: 789 KSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSP 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,600
Number of Sequences: 5004
Number of extensions: 40193
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)