Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0663
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)                   92   4e-19
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)                 36   0.028
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 36   0.037
SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)                 31   0.80 
SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)                  31   1.1  
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)                 31   1.4  
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  

>SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)
          Length = 219

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 44/58 (75%), Positives = 50/58 (86%)
 Frame = +3

Query: 81  VKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRISN 254
           + EL LDNCRST+IVGLTDE+  L+ILS+ NVGLTTLK FP LP LRKLELSDNRIS+
Sbjct: 17  ITELILDNCRSTSIVGLTDEFVKLEILSMINVGLTTLKNFPKLPNLRKLELSDNRISS 74



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 40/76 (52%), Positives = 52/76 (68%)
 Frame = +2

Query: 266 LSGCKKLAHLNLSGNKIKDLETLKPLEAXXXXXXXXXXXXXVTSIEDYKSKVFAMHPSLK 445
           L+G  KL HL+LSGNKIKDLETL+PLE              VT+++DYK+KVF + PSL+
Sbjct: 79  LTGSPKLTHLSLSGNKIKDLETLEPLEKLSNLKSLDLFNCEVTNVDDYKNKVFELIPSLR 138

Query: 446 YLDGFDKYDQXADDSD 493
           YLDG DK    A+++D
Sbjct: 139 YLDGCDKEGNEAEETD 154


>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
          Length = 1383

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +3

Query: 54  SYVYYIPHEVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTL-KGFPTLPMLRKLE 230
           ++V+ + H +  L L NC   ++     E TNL  LSL +  +  L K    L  L+KL 
Sbjct: 402 AFVFTMTHSLTCLTLTNCDIMDVPLSIYELTNLNSLSLVSCNIGVLRKEISDLKQLQKLR 461

Query: 231 LSDNRI 248
           L+DN++
Sbjct: 462 LTDNKL 467


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 90  LNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTL-KGFPTLPMLRKLELSDNRIS 251
           L+L+NC  T+I  +     +L+ L LNN  LT++  G   L  L  L L +N IS
Sbjct: 527 LSLENCNLTSIPDVVFHLESLEKLDLNNNKLTSIPAGITNLTKLTNLNLENNNIS 581


>SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)
          Length = 658

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111 STNIVGLTDEYTNLQILSL--NNVGLTTLKGFPTLPMLRKLELSDNRIS 251
           ST   G+   +T L+ LSL  NN+     +GF  L  L  L +SDNRIS
Sbjct: 81  STITGGVFAGFTALRNLSLTFNNIHTIRARGFAGLNKLEYLNMSDNRIS 129


>SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)
          Length = 335

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/54 (38%), Positives = 28/54 (51%)
 Frame = +3

Query: 90  LNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDNRIS 251
           L LDN     I GL D   NLQ L L+   +  ++G   L  L+ L L +NRI+
Sbjct: 70  LQLDNNIIEKIEGL-DMLVNLQWLDLSFNNIEVIEGLDKLTKLKDLTLYNNRIT 122


>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
          Length = 534

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 266 LSGCKKLAHLNLSGNKIKDLETLKPL-EAXXXXXXXXXXXXXVTSIEDYKSKVFAMHPSL 442
           L+ C+KL+ ++LS NKI D   +  L E              +  I++Y+  +     +L
Sbjct: 99  LASCQKLSIVDLSYNKIDDPNIVDVLAEMPNLSVLNLIGNPVIKKIKNYRKNMILKLKNL 158

Query: 443 KYLD 454
           KYLD
Sbjct: 159 KYLD 162


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 78   EVKELNLDNCRSTNI-VGLTDEYTNLQILSLNNVGLTTLKGFPTLPMLRKLELSDN 242
            ++K LNL +   T +  G+ +    L+ LSL N  +T LKG      +  L++++N
Sbjct: 1095 KLKWLNLSSNNLTILDTGMLERLPELRYLSLENNNITCLKGLQVNNNITSLDVNNN 1150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,621,928
Number of Sequences: 59808
Number of extensions: 279381
Number of successful extensions: 705
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)