Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0663
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.46 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 147 NLQILSLNNVGLTTLKG--FPTLPMLRKLELSDNRI 248
           NLQIL L +  +  LKG  F  L  LR+L L +N I
Sbjct: 843 NLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLI 878



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 144 TNLQILSLNNVGLTTLK-GFPTLPMLRKLELSDNRISN 254
           ++L+ L L+   LT++      L +L+ L+L +NRISN
Sbjct: 431 SDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISN 468


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 406 VFNASNIIIE*VKI-LQILESFKRLQGF 326
           + N S+I+ E  +  LQ+LESFKR   F
Sbjct: 281 LINCSDILEEFERNRLQLLESFKRKVNF 308


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 395 SIEDYKSKVFAMHPSLKYLD---GFDKYDQXADDS 490
           S+ D+K+ +F +    KY D   G D+  Q A  S
Sbjct: 23  SLRDFKANIFQVKYQWKYFDYNFGSDEKRQAAIQS 57


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 193 LSVVRPTLLRLSICKFVYSSVKPTMFVLLQLSRFSSFTSWGI 68
           L+ V P      IC  ++  +KPT   L  +  F      GI
Sbjct: 90  LTFVVPHQFIKRICSALFGKIKPTAIGLSLIKGFDKKQGGGI 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,711
Number of Sequences: 438
Number of extensions: 2520
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)