Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0662
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   1.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   2.0  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.7  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   6.2  

>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 376 PPPRCRDHSIHRGGIRESASRYDS*PRGSHLGPQAVHNREH 254
           PP R R+ ++ R G R SA  +    R    GPQ   + EH
Sbjct: 27  PPRRWRNCTLQRHGSRASADEFCEQYRSRSHGPQGRRSLEH 67


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -1

Query: 407 SSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS 267
           SST  S    +SS    SLN++   +  S  I    S  TP TSS S
Sbjct: 214 SSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNS 260


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 319 SRYDS*PRGSHLGPQAVHNREHGKDLSLAVYLFDEYLQ 206
           +R D+ PR   L P    N  H K +SL   L D YLQ
Sbjct: 41  ARKDTNPRKFCLLPLEGKNHLHNKHVSLYCLLSDRYLQ 78


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 357 ITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENTGKTCL 238
           I Q  +++FV   +   + L  +  + KR +TEN G T L
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNGFTTL 366


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 392 TSLWMKKILSASCFCVSKALARAPISWPTS 481
           +++W   I  A C C++ ++A    ++PTS
Sbjct: 95  SAVWCWLIAGAGCMCIALSVAELVSAYPTS 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,730
Number of Sequences: 5004
Number of extensions: 66915
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)