Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0662
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    34   0.12 
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    34   0.15 
AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    33   0.36 
AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily a...    29   3.3  
L16685-7|AAO12394.1|  306|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = -3

Query: 369 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 271
           +DA +T YI+E+++ +Q  +I   A H +++KR
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 399 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRF 268
           + V K  ++LH     Q  EE F +Q   TIR  A   +DLK+F
Sbjct: 41  KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKF 84


>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = -3

Query: 480 EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRS 301
           E G  + A   AL  +K   E +  +H     ++D    A +T +IEE+++ +Q  +I  
Sbjct: 88  EWGTALKAFEAALALEKFNNESLLKLHSTAGNHND----AHLTDFIEEKYLDEQVKSINE 143

Query: 300 LAGHTSDLKR 271
            A   ++LKR
Sbjct: 144 FARMVANLKR 153


>AC024857-1|AAK31566.2|  869|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 305 protein.
          Length = 869

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -3

Query: 495 SNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQ- 319
           S  TVE  H++ ++A ++ T  +  E + FI  +  + + L+  A  T +   E  S++ 
Sbjct: 636 STRTVESKHDVTSMASSVSTWHEEIEALAFIDGDADEKAMLVQPALKTGWAAMEQASKKD 695

Query: 318 ADTIRSLAGHTSDLKRFITENTG 250
           A+ IRS     + +   +++  G
Sbjct: 696 AEVIRSHVDKLASIAEQLSKRHG 718


>L16685-7|AAO12394.1|  306|Caenorhabditis elegans Hypothetical
           protein ZC21.6b protein.
          Length = 306

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = +1

Query: 19  IRR*LLRIHTIFHITYFLLKTKMDTSRLNSHIC 117
           I R    I TI   TYF +K KMD  R +SHIC
Sbjct: 45  INRTCADIFTILVGTYFYMKQKMD--RCDSHIC 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,102,154
Number of Sequences: 27780
Number of extensions: 383948
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)