Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0662
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    40   0.003
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin...    38   0.012
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf...    33   0.19 
At3g54000.3 68416.m05969 expressed protein                             32   0.58 
At3g54000.2 68416.m05968 expressed protein                             32   0.58 
At1g70750.1 68414.m08155 expressed protein contains Pfam profile...    31   1.0  
At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase...    29   3.1  
At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase...    28   9.5  
At4g34820.1 68417.m04941 expressed protein                             28   9.5  
At2g17510.1 68415.m02025 ribonuclease II family protein similar ...    28   9.5  

>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/71 (25%), Positives = 41/71 (57%)
 Frame = -3

Query: 483 VEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 304
           V+ G  +  +  AL  +K + E++  +H   +KN+D+     +  +IE EF+++Q + I+
Sbjct: 176 VDKGDALYGMELALSLEKLVNEKLLNLHSVASKNNDV----HLADFIESEFLTEQVEAIK 231

Query: 303 SLAGHTSDLKR 271
            ++ + + L+R
Sbjct: 232 LISEYVAQLRR 242


>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
           [Arabidopsis thaliana] GI:1246401, GI:8163920
          Length = 255

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 16/69 (23%), Positives = 39/69 (56%)
 Frame = -3

Query: 480 EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRS 301
           E G  + A+  AL  +K   E++  +H+  ++N    +D ++  ++E EF+ +Q + I+ 
Sbjct: 174 EKGDALYAMELALSLEKLTNEKLLNVHKVASEN----NDPQLADFVESEFLGEQIEAIKK 229

Query: 300 LAGHTSDLK 274
           ++ + + L+
Sbjct: 230 ISDYITQLR 238


>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 883

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -2

Query: 391 H*KQRPPPRCRDHSIHRGGIRESASRYDS*PRGSHLGPQAVHNREHGK 248
           H K+R     RD S  RGG R S++  DS     H GP+ V  R++GK
Sbjct: 349 HSKERRSSDDRDTSSERGGRRSSSATDDSQESSFH-GPERVRVRQYGK 395


>At3g54000.3 68416.m05969 expressed protein
          Length = 301

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 455 WPKPWTRRSSLPRGF-SSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRV 291
           W   + RR  +   F    TGK   T T   +PRS+N + R     KP +F+ S +
Sbjct: 237 WSNQFPRRDVMRAVFIGDHTGKRGSTGTGVFLPRSVNHTSRTETREKPSKFLKSSI 292


>At3g54000.2 68416.m05968 expressed protein
          Length = 301

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 455 WPKPWTRRSSLPRGF-SSSTGKSLKTATSSTMPRSLNTSRRNS*VSKPIRFVASRV 291
           W   + RR  +   F    TGK   T T   +PRS+N + R     KP +F+ S +
Sbjct: 237 WSNQFPRRDVMRAVFIGDHTGKRGSTGTGVFLPRSVNHTSRTETREKPSKFLKSSI 292


>At1g70750.1 68414.m08155 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593; supporting
           cDNA gi|4101563|gb|AF004556.1|AF004556
          Length = 442

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = -3

Query: 603 HDVVKRRPSEL*YDSL*GELGTGPPLESHHTEG----DKGSNYTVEVG-HEIGALAKALD 439
           H V+K +     +D++ GE+  G    +HH  G    +KG N T+E    E+    +AL+
Sbjct: 334 HRVIKSKRLLPLFDAVDGEMENGLSNGNHHENGFDDSEKGENVTIEEEVDELYERLEALE 393

Query: 438 TQKQLAERIFFIHREVTKNSDLLHDAEITQYIEE 337
             ++         ++  K   LLH  EI Q++ +
Sbjct: 394 ADREFLRHCVGSLKKGDKGVHLLH--EILQHLRD 425


>At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase II
           / isopentenyl diphosphate:dimethylallyl diphosphate
           isomerase II (IPP2) identical to isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase (IPP2)
           GB:U49259 [Arabidopsis thaliana]
          Length = 284

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 346 VLSDLGIVEEVAVFSDFPVDEENPLGKLLLRVQGFGQ 456
           +L +LGIV E     D PVDE  PLG++L +    G+
Sbjct: 165 LLDELGIVAE-----DVPVDEFTPLGRMLYKAPSDGK 196


>At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase I
           / isopentenyl diphosphate:dimethylallyl diphosphate
           isomerase I (IPP1) identical to SP|Q38929
          Length = 233

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 346 VLSDLGIVEEVAVFSDFPVDEENPLGKLLLRVQGFGQ 456
           +  +LGIV E     D PVDE  PLG++L +    G+
Sbjct: 114 LFDELGIVAE-----DVPVDEFTPLGRMLYKAPSDGK 145


>At4g34820.1 68417.m04941 expressed protein 
          Length = 321

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 510 EGDKGSNYTVEVGHEIGALAKALD 439
           EG+K  + T  VG EIGAL + LD
Sbjct: 235 EGEKTIDLTGRVGQEIGALLRRLD 258


>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
           SP|P37202 Mitotic control protein dis3
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF00773: RNB-like protein
          Length = 933

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 58  ITYFLLKTKMDTSRLNSHICT*KFNVACLKKLLLNGRIEWGFKTL 192
           ++Y   + +MD SRL   + T   N+  L K++   RI+ G  TL
Sbjct: 590 LSYIEAQARMDDSRLTDSLTTDLRNMNTLAKIMRQRRIDRGALTL 634


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,202,705
Number of Sequences: 28952
Number of extensions: 359228
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)