Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0660
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 163 4e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 162 5e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 162 5e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 4e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 93 5e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 7e-14
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.010
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.010
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 35 0.017
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.023
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.040
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.28
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 31 0.28
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.37
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.65
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 4.6
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 6.1
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 6.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 8.1
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 163 bits (395), Expect = 4e-41
Identities = 80/119 (67%), Positives = 92/119 (77%)
Frame = +2
Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDG 131
Query: 437 QTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAF 613
QTREHALLA+TLGVKQLIV VNKM + ++ + +++G+NP V F
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPF 188
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 71.7 bits (168), Expect = 1e-13
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSYIKKIGLQPSCCRFSCPFSGWHGDXMLEPSTKMPWFXGWQ 690
+S+ RFEEI KE S++IKK+G P F P SG+ GD M+EP+T MPW+ GWQ
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPF-VPVSGFQGDNMIEPTTNMPWYQGWQ 213
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 801 QIRGIGTVXVGXXXMGVLKPGTMV 872
+I GIGTV VG GV+KPG +V
Sbjct: 253 KIGGIGTVPVGRVETGVIKPGMIV 276
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 162 bits (394), Expect = 5e-41
Identities = 79/119 (66%), Positives = 92/119 (77%)
Frame = +2
Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 437 QTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAF 613
QTREHALLA+TLGVKQLIV VNKM + ++ + +++G+NP V F
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPF 188
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 71.7 bits (168), Expect = 1e-13
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSYIKKIGLQPSCCRFSCPFSGWHGDXMLEPSTKMPWFXGWQ 690
+S+ RFEEI KE S++IKK+G P F P SG+ GD M+EP+T MPW+ GWQ
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPF-VPVSGFQGDNMIEPTTNMPWYQGWQ 213
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 801 QIRGIGTVXVGXXXMGVLKPGTMV 872
+I GIGTV VG GV+KPG +V
Sbjct: 253 KIGGIGTVPVGRVETGVIKPGMIV 276
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 162 bits (394), Expect = 5e-41
Identities = 79/119 (66%), Positives = 92/119 (77%)
Frame = +2
Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
TIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+G
Sbjct: 72 TIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDG 131
Query: 437 QTREHALLAFTLGVKQLIVGVNKMIPLNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAF 613
QTREHALLA+TLGVKQLIV VNKM + ++ + +++G+NP V F
Sbjct: 132 QTREHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPF 188
Score = 141 bits (341), Expect = 1e-34
Identities = 64/68 (94%), Positives = 66/68 (97%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 224
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 225 DKLKAERE 248
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 71.7 bits (168), Expect = 1e-13
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSYIKKIGLQPSCCRFSCPFSGWHGDXMLEPSTKMPWFXGWQ 690
+S+ RFEEI KE S++IKK+G P F P SG+ GD M+EP+T MPW+ GWQ
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPF-VPVSGFQGDNMIEPTTNMPWYQGWQ 213
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 801 QIRGIGTVXVGXXXMGVLKPGTMV 872
+I GIGTV VG GV+KPG +V
Sbjct: 253 KIGGIGTVPVGRVETGVIKPGMIV 276
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.7 bits (230), Expect = 4e-21
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +2
Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + G
Sbjct: 303 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG 362
Query: 437 QTREHALLAFTLGVKQLIVGVNKM 508
QTREHA+LA T G+ L+V +NKM
Sbjct: 363 QTREHAVLARTQGINHLVVVINKM 386
Score = 80.6 bits (190), Expect = 3e-16
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 236
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 237 AERE 248
ERE
Sbjct: 296 EERE 299
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 93.1 bits (221), Expect = 5e-20
Identities = 44/84 (52%), Positives = 55/84 (65%)
Frame = +2
Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NG
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENG 301
Query: 437 QTREHALLAFTLGVKQLIVGVNKM 508
QTREHA L LG+ +++V VNK+
Sbjct: 302 QTREHAYLLRALGISEIVVSVNKL 325
Score = 72.5 bits (170), Expect = 7e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +3
Query: 57 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 236
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 237 AER 245
ER
Sbjct: 235 EER 237
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 526 YSEPRFEEIKKEVSSY-IKKIGLQPSCCRFSCPFSGWHGDXML--EPSTKMPWFXG 684
+SE RF+EIK VS + IK +G + S F P S G ++ + S W+ G
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHF-VPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.5 bits (170), Expect = 7e-14
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +2
Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 436
TI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 103 TISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP------- 155
Query: 437 QTREHALLAFTLGVKQLIVGVNKM 508
QTREH LLA +GVKQ++V +NK+
Sbjct: 156 QTREHLLLARQVGVKQIVVYINKV 179
Score = 35.1 bits (77), Expect = 0.013
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 51 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 137
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.010
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 296 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.010
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 140
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 296 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 391
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 34.7 bits (76), Expect = 0.017
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 299 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 478
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 479 KQLIVGVNKM 508
K +I+ NK+
Sbjct: 163 KHIIILQNKV 172
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.023
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +2
Query: 281 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 451
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.86
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGI 146
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.040
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 281 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 272 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 257 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
TI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 80 TINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCG 140
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 296 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 406
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 308 IIDAPGHRDFIKNMITGTSQADCAVLIV 391
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 311 IDAPGHRDFIKNMITGTSQADCAVLIV 391
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 598 SCCRFSCPFSGWHGDXMLEPSTKM 669
+CC SCP W+ + L P+ M
Sbjct: 169 ACCSTSCPSYWWNSEEYLGPAVLM 192
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 6.1
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -1
Query: 385 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCEPXSRSAFSLSNTQAYL 206
EH+A+ L S +L IS R N GNI L S + + S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 205 KDPLPI 188
K LPI
Sbjct: 62 KALLPI 67
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -2
Query: 285 SNFQRAISIVNXAHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWW 106
SN +R + + V +PK I I++ F P S S C+Y S D W
Sbjct: 13 SNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWR 72
Query: 105 T 103
T
Sbjct: 73 T 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,271
Number of Sequences: 5004
Number of extensions: 68829
Number of successful extensions: 246
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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