Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0659
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   2.8  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.5  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 263 CGTCARCV*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSL 144
           CGT         +   W+  +AL+ SR +GNT  L  L L
Sbjct: 173 CGTQVFVGSGRSIDCQWMDSVALNLSRYYGNTEALSSLPL 212


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/79 (22%), Positives = 32/79 (40%)
 Frame = -2

Query: 613 LGQSLPHSAGITSLHNRLTVPSQSNRQTVTLFPHNHDSLVAFVLKGSNYIMGTARIDVVF 434
           L QS  ++    S  NR  VP          F H+  S  + + +G N  +  +++    
Sbjct: 27  LSQSSNNNVSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVLRQGKNAFLKPSQLSFNM 86

Query: 433 NHSNASESDQTKVQNVETN 377
           N S  S +   +  N+ T+
Sbjct: 87  NSSEISNTHWARDFNILTS 105


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -2

Query: 256 HARGASSHRRYRQHGSSGWRSPALAFTETLPVYLC*AWQYSALSKRNSINVTTEGISSFT 77
           HA  +SS        SSG  S +L+ + ++P         S+ S  +S ++TT G+SS  
Sbjct: 121 HALSSSSSSLVASSSSSGMSSSSLSHSSSVP---------SSSSSYHSSSMTTSGLSSSA 171

Query: 76  AI 71
           +I
Sbjct: 172 SI 173


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 21/91 (23%), Positives = 37/91 (40%)
 Frame = -2

Query: 559 TVPSQSNRQTVTLFPHNHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVET 380
           T+ S S ++  T+ P   DS V   +  S+     + ID+    S   E  + +   +E+
Sbjct: 39  TIFSTSRKEQSTIEPM--DSFVENNIANSSSQQSVSEIDIQLPSSEPKEGVKEESNLIES 96

Query: 379 N*IKSLGNIGPLKTSATELLAVLNSSGAPNL 287
           N + ++  I P  T   +       S   NL
Sbjct: 97  NSLDNVQEINPQNTIGDKSAHTEEESSNDNL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,715
Number of Sequences: 5004
Number of extensions: 63738
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)